Frankia alni: FRAAL5753
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Entry
FRAAL5753 CDS
T00384
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase, has polyadenylase activity
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
fal
Frankia alni
Pathway
fal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRAAL5753 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fal03019
]
FRAAL5753 (pnp)
03016 Transfer RNA biogenesis [BR:
fal03016
]
FRAAL5753 (pnp)
Enzymes [BR:
fal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
FRAAL5753 (pnp)
Messenger RNA biogenesis [BR:
fal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FRAAL5753 (pnp)
Transfer RNA biogenesis [BR:
fal03016
]
Prokaryotic type
tRNA degradation factors
FRAAL5753 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
aRib
GvpO
Motif
Other DBs
NCBI-ProteinID:
CAJ64385
UniProt:
Q0RDT1
LinkDB
All DBs
Position
complement(6235796..6237985)
Genome browser
AA seq
729 aa
AA seq
DB search
MDDSTHAAEAVIATPAGNRTVRFETGRLARQAAGSAVAYLGDTMVLSATTVSKQPKEQLD
FFPLTVDVEERMYAAGRIPGSFFRREGRPSEDAILTCRLIDRPLRPSFAKGLRNEIQVVA
TVLALDPDTLYDVVAINAASASTTLSGLPFTGPIGATRVGYVDGEWIAFPTHAELARATF
DMVVAGRVVEDGSDVAIMMVEAEATPGTVELIAGGAPAPTEEVVAAGLEAAKPAIRELCR
AQSELASLAGKAATREFPVFIDHHDDVLEALSAAVGDELSAALRIAGKSERENELDRVRQ
LAAEKVAAQFEGREKEIGAAYRALTKKLVRSRIVTEGVRIDGRSTTEIRELSAEVDYIPR
VHGSALFERGETQILGVTTLAMLRMEQTVDTLNPDRTKRYMHNYNFPPYSTGETGRVGSP
KRREIGHGALAERALLPVLPSREEFPYAIRQVSEALGSNGSTSMGSVCASTLSLLNAGVP
LKAPVAGIAMGLVHADDAYVTLTDILGAEDAYGDMDFKVAGTRDFVTALQLDTKLDGIPA
SVLASALQQARGARLAILDVMAEAIGSPDEMSAHAPRVISVKIPVDKIGEVIGPKGKMIN
QIQADSGAEITVEDDGTIYIGAADGTSAETARSAINAIANPQMPEVGERYLGTIVKITNF
GAFVSLTPGRDGLLHVSKLKTLSGGKRVEKVEDVLTVGQKLQVEITEIDARGKISLSPSA
EAADAAAAS
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
gtggacgactcgacacatgcggccgaggcggtcattgcgaccccggccggaaaccgtacg
gtgcgcttcgagaccggtcggctggccaggcaggccgccggttccgccgtcgcctacctg
ggcgacacgatggtgctctcggcgacgacggtcagcaagcagcccaaggaacagctcgac
ttcttccccctgacggtggacgtcgaggagcggatgtacgccgcggggcggatccccggc
tcgttcttccgtcgcgagggccggcccagtgaggacgcgatcctcacctgccgcctcatc
gaccggccgctgcgcccctcgttcgccaaggggctgcgcaacgagatccaggtcgtggcc
acggtgctggccctcgacccggacactctctacgacgtggtcgcgatcaacgcggccagc
gcgtcgacgaccctgtccgggctgcccttcaccgggccgatcggcgccacccgggtcggg
tacgtcgacggcgagtggatcgccttcccgacgcatgcggagctggcccgggccaccttc
gacatggtcgtggccggtcgtgtcgtcgaggacggctcggacgtggcgatcatgatggtc
gaggccgaggcgaccccgggcacggtggagctgatcgccggcggcgcgcccgcgccgacc
gaggaggtcgtcgccgcgggcctcgaggccgccaagcccgccatccgcgagctgtgtcgc
gcccagagcgagctggcctcgctcgccggcaaggcggcgacgcgggagttcccggtcttc
atcgaccaccacgacgacgtgctcgaggcgctgtccgccgccgtcggcgacgagctgtcc
gccgcgctgcgcatcgccggcaagtccgagcgggagaacgagctcgaccgggtccgccag
ttggccgcggagaaggtcgccgcccagttcgaggggcgggagaaggagatcggcgccgcc
taccgggcgctgaccaagaagctcgtccgctcccgcatcgtcaccgagggcgtgcggatc
gacggccggtcgacgacggagatccgcgagctgtcggccgaggtcgactacatcccgcgg
gtgcacggctcggcgctgttcgagcggggtgagacccagatcctcggcgtcaccacgctg
gcgatgctgcgcatggagcagacggtcgacacgctcaaccccgaccgcaccaagcgttac
atgcacaactacaacttcccgccgtactccaccggcgagaccggtcgcgtcgggtcgccg
aagcggcgcgagatcggccatggtgcgctcgccgagcgggcactgctgccggtactgccc
agccgcgaggagttcccctacgcgatccggcaggtctccgaggcgctgggctccaacggc
tcgacgtcgatggggtcggtctgcgcgagcacgctgtccctgctcaacgccggcgtgccg
ctcaaggcgccggtcgccgggatcgcgatggggctcgtgcacgccgacgacgcctacgtc
acgctgaccgacatcctcggcgccgaggacgcgtacggcgacatggacttcaaggtcgcc
ggcacccgcgacttcgtcaccgccctgcagctcgacaccaagctcgacggcattcccgcc
tcggtgctggcctcggccctgcaacaggcccgcggcgcgcggctggcgatcctcgacgtc
atggccgaggcgatcggcagcccggacgagatgtccgcgcacgccccgcgggtcatctcg
gtcaagatcccggtcgacaagatcggcgaggtcatcgggcccaagggcaagatgatcaac
cagatccaggcggacagcggcgccgagatcaccgtcgaggacgacggcacgatctacatc
ggcgcggcggacggcacgtccgcggagaccgcccgctcggcgatcaacgcgatcgccaat
ccgcagatgcccgaggtcggcgagcggtacctcggtaccatcgtcaagatcaccaacttc
ggggcgttcgtctcgctcaccccgggccgggacggcctgctgcacgtgtcgaagctcaag
acgctctcgggcggcaagcgggtggagaaggtcgaggacgtgctgaccgtgggacagaag
ctccaggtggagatcaccgagatcgacgcccgcggcaagatcagcctttcgccgagtgcc
gaggccgcggacgcggcggcggcttcctga
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integrated database retrieval system
