KEGG   Frankia alni: FRAAL5827
Entry
FRAAL5827         CDS       T00384                                 
Symbol
hupB
Name
(GenBank) DNA-binding protein HU-beta, NS1 (HU-1)
  KO
K03530  DNA-binding protein HU-beta
Organism
fal  Frankia alni
Brite
KEGG Orthology (KO) [BR:fal00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:fal03032]
    FRAAL5827 (hupB)
   03036 Chromosome and associated proteins [BR:fal03036]
    FRAAL5827 (hupB)
   03400 DNA repair and recombination proteins [BR:fal03400]
    FRAAL5827 (hupB)
DNA replication proteins [BR:fal03032]
 Prokaryotic type
  DNA Replication Initiation Factors
   Initiation factors (bacterial)
    FRAAL5827 (hupB)
Chromosome and associated proteins [BR:fal03036]
 Prokaryotic type
  Nucleoid associated proteins
   HU (heat unstable protein)
    FRAAL5827 (hupB)
DNA repair and recombination proteins [BR:fal03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Supressor
      FRAAL5827 (hupB)
SSDB
Motif
Pfam: Bac_DNA_binding DUF2267 HU-HIG Permuted_GreAB-C HU-CCDC81_euk_2 PEP-utilisers_N SSPI Rpf1_C HU-CCDC81_bac_2 Lmo2446-like_N
Other DBs
NCBI-ProteinID: CAJ64459
UniProt: Q0RDK9
LinkDB
Position
complement(6310140..6310424)
AA seq 94 aa
MNKSQLVDRIAQQIEGGRSNATKAVDAVFDAIQEAVASGEKVTITGFGVFERVERAARTG
RNPATGEPVHVAASVVPKFRPGSEFKSSVSASGD
NT seq 285 nt   +upstreamnt  +downstreamnt
gtgaacaagtcccagttggttgaccgcatcgcccagcagatcgagggcggacggtcgaac
gccaccaaagccgtcgacgccgtgttcgacgccattcaggaagccgtcgccagcggcgag
aaggtgaccatcaccggattcggcgtgttcgagcgggtcgagcgggccgcgcgcaccggg
cgcaacccggcgacgggcgagcccgtgcacgtcgcggcctcggtggtgccgaagttccgg
cccggctccgagttcaagtcgagcgtctccgcgagcggcgactga

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