Frankia alni: FRAAL5948
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Entry
FRAAL5948 CDS
T00384
Symbol
rho
Name
(GenBank) Transcription termination factor rho
KO
K03628
transcription termination factor Rho
Organism
fal
Frankia alni
Pathway
fal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FRAAL5948 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fal03021
]
FRAAL5948 (rho)
03019 Messenger RNA biogenesis [BR:
fal03019
]
FRAAL5948 (rho)
Transcription machinery [BR:
fal03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FRAAL5948 (rho)
Messenger RNA biogenesis [BR:
fal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FRAAL5948 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
AAA_25
NACHT
Motif
Other DBs
NCBI-ProteinID:
CAJ64573
UniProt:
Q0RD98
LinkDB
All DBs
Position
complement(6446175..6448550)
Genome browser
AA seq
791 aa
AA seq
DB search
MSARESAAPATPASPPHESGPAAGTSSADAVTTAPAADNGSARAGRGSRAAAATTPTAEG
ATATRRRRQGTGLSAMLLPELQSMASSMGIQGVGRLRKGQLIAAIQNLQNGEAAGGSTAS
APTTDQAPVAPIPAPSEAPAAAPLAARQSAGDGGGSSTTTRTRSRRGASRGVASPTLEQP
TLPEPAGDTVVETRPAPVVTAPAQQAALSAQPTAAAQSAPPQPATSPGRQGDGAARGRED
RRDRSGDNGRAGESGRSGDNGRSGESGRSGDNGRSGDNARSGESGRSGDGGERPTNDRQG
TDRRSGGDRQDRQSGDRSSGRADRTQGDRSGNDRSGGDRSGNDRSGSDRPGSDRSGGDRP
GSDRPGSDRSGQNGQSDDDFAGRSRRGRFRERGRNRGRGGQAGPAENEPVVREDDVLVPV
AGILDVLDNYAFVRTSGYLTGPTDVYVSLAQVRRNGLRRGDAITGVVRAPQEGEQRRDKY
NALVRLDTINGMEPEEARGRPEFTKLTPLYPQERLRMETEPHLLTTRVIDLVMPIGKGQR
ALIVSPPKAGKTMVLQSIANAITTNNPEVHLMVVLVDERPEEVTDMQRSVKGEVIASTFD
RPPADHTNVAELSIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTA
LYPPKRFLGAARNIENGGSLTIIATALVETGSTMDTVIFEEFKGTGNAELKLDRKIADKR
IFPAVDVDASSTRKEEILLAPEELSIMHKLRRVLHTRENQQALELLLDRLKQSRTNYEFL
MQIAKTAPPQD
NT seq
2376 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgcacgtgagtctgcggcgcctgcgacgcctgcatcgccgccccacgagagcggg
ccggcggccggcacctcgtccgcagacgccgtcaccaccgcgcccgccgccgacaacggc
agcgcgcgcgccggccgcggttcccgggccgccgccgcgacgaccccgaccgccgagggc
gccaccgcgacccggcgacgccggcagggcaccgggctgtccgcgatgctgcttcccgag
ctgcagtccatggcctcgtccatgggtatccagggagtgggccgactgcgcaagggccag
ctcatcgccgcgatccagaacctgcagaacggtgaggccgcgggcggttccaccgcttcc
gctcccaccaccgaccaggcaccggtggcgcccatcccggcgccgagtgaggcgcccgcc
gcggcgcccctggcggcccggcagtccgccggcgacggcggcggctccagcaccaccacc
cgcacccgttcccgccgcggcgcgtcgcgcggcgtggccagcccgaccctcgagcagccg
accctgccggagccggccggcgacacggtcgtcgagacccgtccggcccccgtcgtgacg
gccccggcgcagcaggcggccctctccgcgcagccgaccgccgccgcccagtccgccccg
ccccagccggcgaccagccccggccgccagggcgacggtgctgcccgcggccgtgaggac
cgccgcgaccgctccggtgacaacggccgcgccggcgagagcggtcgctccggtgacaac
ggtcgctcgggcgagagcggtcgctccggtgacaacggtcgctcgggcgacaatgcccgc
tcgggcgagagcggtcgctccggtgacggcggcgagcggccgacgaacgaccgtcagggc
acggaccgtcggtccggcggggatcgtcaggaccggcagtccggtgaccgctcctcgggc
cgcgccgaccggacccagggtgaccgttccggcaacgaccgctcgggcggcgaccgttcc
ggtaatgaccgttccggtagcgaccgtccgggtagtgaccgctccggtggcgaccgtccg
ggtagtgaccgtccgggtagcgaccgttccggccagaacggccagagcgacgacgacttc
gccggccgcagccggcggggccggttccgcgagcgtggccgcaaccgcggtcgcggcggg
caggccggtccggccgagaacgagccggtggtgcgcgaggatgacgtcctcgtgcccgtc
gccggcatcctcgacgtcctggacaactacgccttcgtccggaccagcggctacctgacc
ggcccgaccgacgtctacgtcagcctggcccaggttcgccgcaacgggctgcgccgcggc
gacgccatcaccggcgtcgtccgcgcgccgcaggagggcgagcagcgccgggacaagtac
aacgcgctggtccggttggacacgattaacgggatggagccggaggaggcgcgcgggcgg
cccgagttcaccaagctcacgccgctgtacccgcaggagcgtctgcggatggagaccgag
ccccacctgctcacgacgcgggtcatcgacctcgtcatgccgatcggcaaggggcagcgc
gccctcatcgtcagcccgcccaaggccggcaagacgatggtgctgcagtccatcgccaac
gcgatcaccacgaacaacccggaagtccacctcatggtcgtcctcgtcgacgagcggccg
gaggaggtcacggacatgcagcgctcggtcaagggcgaggtgatcgcctccaccttcgac
cggccgccggccgaccacaccaacgtcgccgagctgtccatcgagcgggccaagcgcctg
gtcgaactcggccacgacgtcgtcgtcctgctcgactcgatcactcggctgggccgcgcc
tacaacctggccgcccccgcctccggccggatcctgtccggcggtgtcgactcgaccgcg
ctctacccgccgaagcgcttcctcggcgcggcgcgcaacatcgagaacggcgggtcgttg
acgatcatcgcaacggcgctggtcgagacgggctcgacgatggacaccgtgatcttcgag
gagttcaaggggacgggcaacgcggagctcaagctcgaccgcaagatcgccgacaagcgg
atcttcccggcggtcgacgtcgacgcctccagcacccgcaaggaagagatcctcctcgcc
cccgaagaactctcgatcatgcacaagctgcgccgggtgctccacacccgggagaaccag
caggcgctggagctcctgctcgaccgtctcaagcagtcccggacgaactacgagttcctc
atgcagatcgccaagacggcgccgccgcaggattag
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