Frankia alni: FRAAL5977
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Entry
FRAAL5977 CDS
T00384
Name
(GenBank) putative DNA helicase
Organism
fal
Frankia alni
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTES_1575
AAA_12
AAA_11
AAA_30
AAA_19
nSTAND3
AAA_16
ResIII
AAA_22
Helicase_RecD
UvrD-helicase
UvrD_C_2
SLFN-g3_helicase
PhoH
DEAD
IstB_IS21
CbiA
TrwB_AAD_bind
AAA_7
Motif
Other DBs
NCBI-ProteinID:
CAJ64602
RhizoBase:
FRAAL5977
UniProt:
Q0RD71
LinkDB
All DBs
Position
6480284..6485359
Genome browser
AA seq
1691 aa
AA seq
DB search
MTARHDDAVQRAALADRCHRLVRFLHEVAVARSARVRTVEEHPLAVWLADIPAGVALAEH
AGAGEVLLTAPAAATLPPPPPLPPLLAGRIRLPDAAAADPDRPPAWPNADVGADVGADAD
ADADPGADAATGPDPASPEYGRIEAAYREWLPGWRIWATRARADAERRALHNTLHAVAAR
VAQEGDALELVLATGLLTWAPPGGPLIREHLLSTRVSCEIDPVSSDIRVRVPAGGATRLG
DGPLLDGLPGFRRERTNHLHERLQNRPPVPLGADDPRLLRDWLALALDVPVDGFDPQDAP
PPPSPPDGPAHPRVTFAPALVLRVRDQASLLTYYERMLAALRGDGPPPLGLVQLVATLDA
DERLAWLDAEGATSGAELGADPLLPLPASPEQARVLERLRHDNGVVVEGPPGTGKTHTIA
NLISALLAEGQRVLVTSQKAQALRVLREKLPPELQRLCVSLTDVEEASGPAGGAAATVDA
GGVGSPELAASVSALAAEKAVYHPEALDRRIEQAARRRAEALRARAELAERARGARAAER
AVHPDGEVGAAGWGGTRAGIAARVRDGGEAHGWLPLPVPPAVSGDERPAPLTDTEAVELY
SLLRACADDPVSPAATDAGRPADPADPTDVPTGAVPPVLPAARFAALVTADRAARRAAEA
ARAEVTAAARGLLDAIATAGPGSSPTGPLRAAVTALVRALDDLSAHGARGPDREWIPAAL
DDALAGRDRLLWAKVSAAAPLIAEAARHVDDLGLRAVVLPSAGSAPIDPARVADGGAGVP
GGAGEPDRAVPDRAEPDRAEPDGAEPDGAGRGTELDPAVLLPRAEALRAHLDEGAELRRR
FRPKVQRDADALLRHVTVDGVAPTTPELLDVVLTRLRAELAVEAAGRGWTLVGRPPRPGD
PLEVRLSRLVEGQQAVERIDAVVAARDRVVALAAEAAPGQPVTIDSAADGRDLAAAMAAL
EPMAAAVDADRALADLADAYDRLAADPDAPTALAAELGAVAAAARTRDADAYATARAALD
AAAARRQAAARQAVLLHRLRAAHPALADLLTAATIHRSDRGPGGERGRDDGGDDPWPARL
ASFSAAWAWAVAADWLTRAARDAGVPGGAATASPDLDAQLDAAEDVLAAATAELAGAKAW
KHCLERMGAEQSAALRAYADTVAAGGTLAGRHAERYRQAAREAMEIAQTAVPAWVMPIRE
VLSTIPAVRDSFDVVIVDEGSQAGLDSLFLLWLAPRVIVVGDDRQCTPPVDPAQELDPVL
DRLDALLPDVPAWLRVGFTPRSSLFSLLRTRFGEVIRLREHFRCMPEIIEWSSAMFYRDA
PLLPLRQFGADRLTPLVARFVPHGFTTATAAGPRNPAEAEALVAQVLACAEDPRYAGLSF
GVVVTQGTAQATLIRDQLAERMSAAEHLRRRLRVGTPADFQGDERDVVFLSLVVAPGDRP
VPLTRLEYQRRFNVAASRARDQVWLFHSVSPADLDHQDLRHSYLSYVLSAARPAAPLPGV
TPPLAEVATDRPHPAFGSLFEQRVFRHLAGRGYLVTPQVEVNGRRVDLVVAGGRARLAVE
CDGDVGPGPAEIAREFDRERELRRAGWRFWRVRQSDFELDPEAALASLWPRLAAAGIAPM
AAERTDPDGRGAPGRPTAPSGPVRAGADELLHRWRPITLSELEGLDDAPAPAGRGDPAGA
RRSPGTGASAD
NT seq
5076 nt
NT seq
+upstream
nt +downstream
nt
gtgacggcgcgccacgacgacgccgtgcagcgggcggcgctggccgaccgctgccaccgg
ctggtgcgcttcctgcacgaggtcgcggtggcccgctccgcgcgggtgcggaccgtcgag
gagcacccgctcgccgtctggctcgccgacatcccggccggcgtcgccctggcggagcac
gccggcgccggcgaggtcctgctgaccgcccccgccgccgccacgctgcccccgcccccg
ccgctcccgccgctgcttgccggccggatccgcctgcccgacgcggccgccgccgacccc
gaccgcccgccggcatggccgaacgccgacgttggcgccgacgttggcgccgacgcggac
gcggacgccgacccgggcgccgacgccgcgaccggtcccgacccggcgagcccggagtac
ggccggatcgaggccgcctaccgcgagtggctgcccggatggcggatctgggcgacgcgc
gcccgggccgacgccgaacgccgcgccctgcacaacacgctgcacgccgtcgccgcccgg
gtggcccaggagggcgacgcgctggagctggtgctggccacgggcctgctcacctgggcg
ccgcccggcggcccgctcatccgcgagcacctgctgtccacccgcgtgagctgcgagatc
gacccggtcagctcggacatccgggtgcgggtcccggcgggcggggccacccgactgggc
gacggcccgctgctcgacggccttcccgggttccgccgggaacggaccaaccacctgcac
gaacgcctgcagaaccggccaccggtcccgctcggcgccgacgacccgcggctgctgcgg
gactggctggccctggcgttggacgtgccggtggacggcttcgacccgcaggacgcgccg
ccgccgccgtcaccgccggacggcccggcccacccccgggtgaccttcgcccccgcgctc
gtgctgcgcgtgcgtgaccaggcctcgctgctgacctactacgagcggatgctggcggcg
ttgcgcggcgacgggccgccgccgctgggactcgtccagctcgtcgccaccctggatgcc
gacgagcggctcgcctggctcgacgccgagggcgcgacgagcggcgccgagctcggcgcc
gacccgctgctgccgctgccggccagccccgagcaggcccgggtgctcgaacggctgcgc
cacgacaacggcgtcgtcgtcgagggtccgcccggcaccggcaagacccacacgatcgcg
aacctgatctccgcgctgctcgccgagggtcaacgggtcctcgtcaccagccagaaggcg
caggccctgcgggtgctgcgggagaagctgccgcccgaactgcagcggctgtgcgtgtcg
ctcaccgacgtcgaggaggcctccggccccgccggcggtgcagccgcgacggtggacgcc
ggcggggtcggttcgcccgagctcgccgcgagcgtcagcgcactggccgcggagaaggcg
gtctaccaccccgaggcgctcgaccgccggatcgagcaggccgcgcgacggcgggccgag
gcgctgcgcgcccgggccgagctcgccgagcgggcccgcggcgcgcgggccgccgagcgc
gccgtgcatccggacggcgaggtcggcgccgcgggctggggcgggacccgggcgggcatc
gccgcccgggtccgcgacggtggcgaggcccacggctggttgccgctgcccgtgccgccc
gcggtcagcggcgacgaacggccggcgccgctgaccgacaccgaggcggtcgagctgtac
tccctgttgcgtgcctgcgccgacgacccggtctcgccggcggcgacggacgccgggcgc
ccggcggatccggcggacccgacggatgtcccgaccggcgcggtaccaccggtcctgcct
gcggcacgcttcgccgcgctggtgaccgcggaccgtgcggcccggcgggcggccgaggcg
gcccgggccgaggtcaccgccgccgcccgcggcctgctggacgcgatcgccacggccggc
cccggatcgtcgccgaccggcccgctgcgggcggcggtgaccgcgctcgtccgcgccctc
gacgacctgtccgcgcacggcgcccgcgggccggatcgggagtggatccccgccgccctc
gatgacgccctcgccggccgggaccggctgctgtgggccaaggtgagcgccgccgcgccg
ctcatcgccgaggcggcccgccacgtcgacgacctcggcctgcgcgccgtcgtgctgccc
tccgccggctccgccccgatcgacccggcccgggtggcggacggcggcgcgggcgtcccc
ggcggcgcgggcgaacccgaccgcgccgtccccgaccgtgctgaacccgaccgcgctgaa
cccgacggcgccgaacccgacggcgccgggcggggcaccgagctcgatcccgccgtcctg
ctcccccgcgccgaggcgctgcgggcacatctggatgagggcgccgagctccggcgtcgc
ttccggccgaaggtccagcgggacgccgacgcgctgctgcgccacgtgaccgtcgacggg
gtcgcgccgaccaccccggaactgctcgacgtcgtcctgacccgcctgcgggcggagctc
gccgtcgaggccgccggtcgcggctggaccctggtgggccgcccaccgcggcccggtgat
ccgctggaggtccggctgtcccggctggtcgaggggcagcaggccgtcgagaggatcgac
gccgtcgtggcggcgcgagaccgggtcgtcgccctcgccgccgaggcggcgcccgggcag
ccggtcacgatcgactccgctgcggacgggcgggatctcgccgccgcgatggccgcgctc
gagccgatggccgccgcggtcgacgccgaccgggcgctcgccgacctcgccgacgcctac
gaccgcctcgccgccgaccccgacgcccccaccgcactggccgccgagctcggtgccgtg
gccgccgccgcccggacccgcgacgccgacgcctacgccaccgcccgcgccgcgctcgac
gccgcggcggcccgccggcaggccgccgcccggcaggccgtgctgctccaccggctgcgt
gcggcgcatcccgcgttggcggatctcctgaccgctgccaccatccaccgatccgaccgc
ggccccggcggcgaacgggggcgcgacgacggcggcgatgatccctggccggcccggctg
gcgtcgttctcggccgcctgggcctgggccgtcgcggccgactggctgacccgagccgcc
cgcgacgcgggcgtccccggcggtgcggccacggcgtcgcccgacctggacgcccagctc
gacgcggccgaggacgtcctcgccgcggccaccgcggagctggccggggcgaaggcgtgg
aagcactgcctggaacggatgggcgccgagcagtcggccgcgctgcgcgcctacgccgac
accgtcgccgccggcggcacgctcgccggtcggcatgccgagcgctaccgccaggccgcc
cgggaggcgatggagatcgcccagacggcggtgccggcctgggtgatgccgatccgggag
gtgctgtcgaccatccccgcggtccgcgacagcttcgacgtcgtcatcgtcgacgagggc
agccaggccgggctcgacagcctgttcctgctgtggctggcgccccgcgtgatcgtcgtc
ggcgacgaccgccagtgcaccccgccggtcgacccggcgcaggagctcgacccggtcctc
gaccggctcgacgccctgctgccggacgtgccggcgtggctgcgcgtcggtttcaccccg
cggtccagcctgttcagcctgctgcggacccgcttcggcgaggtgatccggctgcgcgaa
cacttccgctgcatgcccgagatcatcgagtggtcgtcggcgatgttctaccgggacgcg
ccgctgctgccgctgcgccagttcggcgcggaccggctgacgccgctggtcgcgcggttc
gtcccgcacgggttcaccacggccactgcggcggggccgcgtaacccggccgaggccgag
gcgctcgtcgcgcaggtcctggcctgcgccgaggacccgcgctacgccgggctcagcttc
ggcgtcgtggtcacccagggcaccgcgcaggccacgctgatccgcgaccagctcgccgag
cggatgtcggccgccgagcacctgcgccgccggctgcgggtgggcacaccggccgacttc
cagggcgacgagcgcgacgtcgtgttcctgtcgctggtcgtcgcgccgggcgaccggccg
gtcccgctgacccggctggagtaccagcggaggttcaacgtcgcggcctcccgggcgcgc
gaccaggtctggctgttccactcggtgtcgccggccgacctcgaccaccaggatctccgc
cacagctacctcagctacgtgctgtcggcggcgcgcccggccgcgccgctgcccggggtg
acgccaccgctcgccgaggtcgccacggaccgcccccatcccgccttcggttcgctgttc
gagcagcgggtgttccgccacctcgccgggcgcggctacctcgtcacgccccaggtggag
gtcaacggccggcgggtcgacctggtcgtcgccggcgggcgggcccggctcgccgtcgag
tgcgacggggacgtcggccccgggccggcggagatcgcccgcgagttcgaccgggaacgg
gagctgcgccgggcgggatggcggttctggcgggtccgtcagtccgacttcgagctcgac
cccgaggcggcgctggcctcgctgtggccgcggctggccgccgccggaatcgccccgatg
gcggccgagcggacggaccccgacgggcggggggcgccgggccgcccgaccgccccgagc
gggccggtccgcgccggcgcggacgagctgctgcaccgctggcgtccgatcacgctctcg
gagctggagggcctcgacgacgcgccggcaccggccgggcgcggcgatccggccggtgca
cggcgctcgccgggtaccggcgcctcggccgactga
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