Frankia alni: FRAAL5992
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Entry
FRAAL5992 CDS
T00384
Symbol
sigH
Name
(GenBank) SigH putative RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
fal
Frankia alni
Brite
KEGG Orthology (KO) [BR:
fal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fal03021
]
FRAAL5992 (sigH)
Transcription machinery [BR:
fal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FRAAL5992 (sigH)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
HTH_23
HTH_5
MarR_2
DUF7343
MarR
Sigma70_ECF
HTH_Crp_2
HTH_3
GerE
HTH_24
NirdL-like_HTH
Motif
Other DBs
NCBI-ProteinID:
CAJ64617
UniProt:
Q0RD56
LinkDB
All DBs
Position
6501261..6502160
Genome browser
AA seq
299 aa
AA seq
DB search
MAALSQRGAALDEHPAERGQEADLGAEVAAQPVPTAEPERESTERTHSPDRAMARALFVR
LAELPEGDAERAAIRDQLVRMHLPLVEYLARRFRNRGEPLDDLVQVATIGLIKSVDRFDP
ERGVEFSTYATPTIVGEIKRHFRDKGWAIRVPRRLQELKLSLTKATSELSQTLGRSPTVS
EIARHLQMSEEDVLEGLESANAYSAVSLDAPDSGDDEAPAVADTLGVQDESLEGVEYRES
LKPLLEKLPPREKRILLLRFFGNMTQSQIATELGISQMHVSRLLARTLAQLRRGLLEDG
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
gtggccgccctgagccagcggggggcggccctggacgaacatcccgccgagcgaggccag
gaggcggacctcggtgccgaggtcgcggcccagccggtgccgaccgccgagcccgagcgc
gagagcaccgagcgcacccactctcccgaccgggcgatggcccgggcgctgttcgtgcgc
ctggccgagctgcccgagggtgacgcggagcgcgccgccatccgtgaccagctggtccgg
atgcatctgccgctggtggagtacctcgcccgtcgctttcgcaaccgtggcgagccgctc
gacgacctcgtccaggtcgccacgatcggcctgatcaagtcggtggaccggttcgacccg
gagcgcggggtggagttctccacctacgccaccccgacgatcgtcggcgagatcaagcgg
cacttccgcgacaagggctgggcgatccgggttccccgccgtctgcaggagctcaagctc
tccctgacgaaggcgacgtccgagctgtcccagacactcggccgctcccccaccgtcagc
gagatcgcccggcacctgcagatgagcgaggaggacgtcctcgagggcctcgaatcggcc
aacgcctactcggcggtctccctcgacgcgccggactccggtgacgacgaggctcccgcc
gtggcggacaccctcggcgtccaggacgagtccctggagggcgtcgagtaccgcgagtcg
ctcaagccgctgctggagaagctcccgccgcgggaaaagcgcatcctgctcctgcgcttc
ttcggcaacatgacccagtcgcagatcgccaccgagctcggaatatcccagatgcacgtg
tcccggctgctggcccgaaccctggcccagctacgccgcggcctgctcgaggacggctga
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