Flavobacterium album: HYN59_04120
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Entry
HYN59_04120 CDS
T06577
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
falb
Flavobacterium album
Brite
KEGG Orthology (KO) [BR:
falb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
falb03016
]
HYN59_04120
Enzymes [BR:
falb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HYN59_04120
Transfer RNA biogenesis [BR:
falb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HYN59_04120
Prokaryotic type
tRNA splicing ligases
HYN59_04120
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AWH86916
UniProt:
A0A2S1R2V9
LinkDB
All DBs
Position
complement(928050..929447)
Genome browser
AA seq
465 aa
AA seq
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MAKLRLRGKDLIDIGYPQNKSISIAMEIMLRHYKRETKPRALAILKEVLDDPAKFKGNGI
FGKISEALLEAKKTESRQLNNTRASFTIFGENEIGASAKEQLFTALKLPVSKAGALMPDG
HSGYGLPIGGVLATENAVIPYGVGVDIGCRMCLSIFDINPSFIEGHKDKYVGILETHTKF
GTNEVHKSRGDHEIFERDAFREIPLLKKLKNKAYQQLGSSGGGNHFVEFGIVEVLGDDNE
FKVPPGKYVGVLSHSGSRGLGANVAKEYTYLATKQTPLPKMAQHLAWLDLDSHDGQEYWI
AMNLAGDYASACHHDIHRRIAKALGERPLAMVENHHNFAWKEIVNGQELIVHRKGATPAQ
KNVLGIIPGSMTAPGYIVKGKGNPLSLNSASHGAGRQMSRTDAKRSVTQSELKKVLKDHG
VTLLGAGLDEAPMAYKDIKKVMAHQTELVDVVGTFLPKIVRMDRG
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaattaagattaagaggcaaagacctcatcgatataggatatccgcaaaacaaa
tccatcagcatagcaatggagatcatgctgcgccactacaaaagggaaacaaagcccagg
gcgctcgcgatactgaaggaagtgctggatgatcctgcaaaatttaaaggcaacggcatc
tttggtaaaatttccgaagcgctgctcgaggccaaaaaaaccgaatcacggcagctgaac
aacacccgcgcatcgttcaccatttttggtgagaacgagatcggggcaagtgccaaagag
caattgttcactgcgctgaaactgccggtttctaaagcaggtgcactgatgcccgacggc
cactcaggttacggcctgcccattggcggggtgctggcgacagaaaatgcggtgataccc
tatggagtaggtgtagatatcgggtgccggatgtgcctgagcatattcgacatcaacccg
tcgttcatcgaagggcataaggacaaatatgtgggcatactcgaaacgcacaccaagttc
ggcactaatgaagtacacaaaagccgtggggaccatgagatctttgaacgtgatgccttc
agggaaataccattgctgaaaaagcttaagaacaaagcctaccaacagttaggcagttcc
ggcggcggcaatcacttcgtggagtttggcatcgtagaagtgctgggagatgataatgaa
tttaaagtgccgccgggtaagtatgtaggtgtattatcgcacagcgggtcgcgcgggctt
ggtgccaatgtggccaaagagtacacctacctcgccacgaagcaaacgccgctgccaaaa
atggcgcagcaccttgcctggctcgatctcgactcgcacgatggacaggaatactggatc
gcgatgaaccttgccggtgattatgcctctgcatgccaccacgacatccacagacggata
gcgaaggcgttgggcgaaaggccgctggctatggtagagaaccatcacaactttgcgtgg
aaggagatcgtgaacgggcaggaactcatcgtgcaccgcaaaggcgctaccccggcacaa
aagaacgtgctgggcattatcccgggatcgatgaccgcaccgggttacattgtaaaggga
aaaggcaacccgttatcactaaattcggcttcacatggagcaggaaggcaaatgtcgcgc
accgatgccaaacgatccgtcacacaaagcgagctcaaaaaagtgttaaaggatcacggc
gtgacacttcttggcgcaggcctggatgaagcgcctatggcctacaaggacattaagaag
gtaatggcacaccaaacggaactcgtggatgttgtgggcactttcctgccaaagatcgtg
aggatggacagggggtga
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