Ferriphaselus amnicola: OYT1_ch1053
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Entry
OYT1_ch1053 CDS
T05631
Name
(GenBank) Integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
fam
Ferriphaselus amnicola
Brite
KEGG Orthology (KO) [BR:
fam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fam03032
]
OYT1_ch1053
03036 Chromosome and associated proteins [BR:
fam03036
]
OYT1_ch1053
03400 DNA repair and recombination proteins [BR:
fam03400
]
OYT1_ch1053
DNA replication proteins [BR:
fam03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
OYT1_ch1053
Chromosome and associated proteins [BR:
fam03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
OYT1_ch1053
DNA repair and recombination proteins [BR:
fam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
OYT1_ch1053
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
S1-like
Motif
Other DBs
NCBI-ProteinID:
BBE50613
UniProt:
A0A2Z6GAT9
LinkDB
All DBs
Position
1079487..1079774
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AA seq
95 aa
AA seq
DB search
MTRSELIANLAERHPQLLAKDAELAVKVILDTLGETLASGGRIEIRGFGSFALNYRPPRQ
GRNPKSGDKVQVPAKYVPHFKAGKELRERVDYPAK
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atgactcgttcagaactgattgccaacctagcagagcgtcatccgcaactgttggccaag
gatgcggaactggcggtcaaggtcatccttgacacgctgggcgaaactttggctagcggt
ggtcgcatcgaaattcgcggctttggcagctttgcgctgaactatcgtccaccccgccaa
gggcgcaatcccaagtcgggcgacaaggtgcaagtaccggccaagtatgtcccgcacttc
aaggcgggcaaagagttgcgcgaacgggtagattaccccgccaagtaa
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