Ferriphaselus amnicola: OYT1_ch1522
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Entry
OYT1_ch1522 CDS
T05631
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fam
Ferriphaselus amnicola
Pathway
fam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OYT1_ch1522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fam03019
]
OYT1_ch1522
03400 DNA repair and recombination proteins [BR:
fam03400
]
OYT1_ch1522
Enzymes [BR:
fam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OYT1_ch1522
Messenger RNA biogenesis [BR:
fam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OYT1_ch1522
DNA repair and recombination proteins [BR:
fam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OYT1_ch1522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
IF2_N
Motif
Other DBs
NCBI-ProteinID:
BBE51070
UniProt:
A0A2Z6GCB4
LinkDB
All DBs
Position
complement(1505080..1506897)
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AA seq
605 aa
AA seq
DB search
MPTAQQTLQEVFGYAAFRGAQQSIVEHVVAGGDALVLMPTGGGKSLCYQIPALLRSGVGI
VVSPLIALMQDQVDALKQLGVSAAFLNSSLDAEAAREVYRQIHRGELKLLYVAPERLMTE
GFLSLLDEMYRESSIALFAIDEAHCVSQWGHDFRPEYRALTVLHEHFPDVPRIALTATAD
APTRREIVERLSLEQAQQFVSSFDRPNIRYRVTQKANARQQLRSFLEMEHPEDAGIVYCL
SRKKVEETAAWLQEQGWDALPYHAGLDAATRNQNQRRFLREEGVIMVATVAFGMGIDKPN
VRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGDVVSMRQMLLSGDAPEERKRV
ELQKLDALLGFCESTDCRHQTILRYFGEQHPGDCGQCDNCLSPVDTWDATEAARMALSCV
YRTGQRFGVAHLIDVLLGKATPKVEQFNHQQLSTFGIGNGLTQQQWSSVYRQLVAAGLIS
VEMEAYGGLRLAETARPVLRGEQEVWLRRDAEPTKRRNTKAERGSRLREAFAHVHEDPLW
QALKTKRMELAKEQGVPPYVIFHDSTLLEILNHKPQTMAEMGRISGVGQAKLAKFGNAFL
QVVAE
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgccgacagcgcagcaaactcttcaagaagtctttggctacgccgcatttcgcggcgct
caacagagtatcgtcgagcatgtcgttgcagggggcgatgccctagtgctgatgcccacc
ggcggtggcaaatccttgtgttaccagatccctgccttgctgcgttccggggttggtatc
gtcgtttcgccgctgatcgccttgatgcaggatcaagtggatgcgctcaagcagttgggc
gtatcggcggcgttccttaactccagtttggatgccgaagctgcccgcgaggtgtaccga
cagatacatcgcggtgaattgaagctgctgtatgtcgcgccggaacgattgatgacggag
ggcttcttgagtttgctggacgagatgtatcgagaatccagcatcgcactctttgccatc
gacgaagctcattgcgtttcgcaatgggggcacgacttccgccctgaataccgcgcactt
accgtattacacgagcactttcctgatgtgccgcgcatcgccctcactgcgactgccgat
gcgccgacgcggcgcgagatcgttgagcgcttatcgttggagcaggcgcagcagttcgtt
tccagttttgatcgaccaaacatccgttatcgcgttacgcagaaagccaatgctcgtcaa
cagttgcgatcgtttctggagatggaacatccagaggatgctggcatcgtgtattgcttg
tcgcgcaagaaagtcgaagagacagccgcttggttgcaggagcagggctgggatgcgtta
ccctatcacgctggactcgatgcggcgacccgcaaccaaaaccaaagaaggttcctgcgg
gaagaaggcgtcatcatggtcgctactgttgccttcggcatgggcatcgacaagcccaac
gtgcgcttcgtcgcccacctcgacctgcccaaaagcatggaaggttattaccaagaaacg
ggtcgtgccggccgtgacggtctgcctgcgaatgcgtggatggcctatgggttgggcgat
gtggtgtccatgcggcagatgctgttgtccggcgacgcgccggaagagcgtaagcgtgtc
gagttgcaaaagctggatgcgctgctaggtttctgcgagtccaccgattgccgtcaccag
accatcttgcgctattttggcgagcaacatcctggcgactgcggccagtgcgacaactgc
ctctcgccagtggatacttgggatgctaccgaggcggcccgcatggcgttgtcctgcgta
tatcgcaccggacaacgcttcggtgtggctcatctgatcgacgtcttgctgggcaaagcc
acccccaaggtcgagcagttcaaccaccaacaactgagcaccttcggcatcggaaacgga
cttacccagcagcaatggagcagcgtctatcgccaactggtcgcagcggggctcatctct
gtggagatggaggcctacggtggcttgcgtttggccgaaaccgcgcgccctgtattgcga
ggagaacaggaagtatggctgcgccgcgatgccgagcctaccaaacggcgcaataccaag
gctgagcgcggctcgcgtttgcgcgaggcttttgcccatgttcacgaagatccgctgtgg
caggcgctaaaaaccaaacgtatggagcttgccaaagagcagggggtgccaccttacgtc
attttccacgacagtaccttgctggaaattctcaaccacaaaccacaaacgatggccgag
atggggcgtatcagcggggtcggacaagccaaactggcgaaattcggcaacgcgttcttg
caggtggtggcagagtag
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