Ferriphaselus amnicola: OYT1_ch1887
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Entry
OYT1_ch1887 CDS
T05631
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fam
Ferriphaselus amnicola
Pathway
fam03410
Base excision repair
fam03430
Mismatch repair
fam03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
OYT1_ch1887
03430 Mismatch repair
OYT1_ch1887
03440 Homologous recombination
OYT1_ch1887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fam03400
]
OYT1_ch1887
DNA repair and recombination proteins [BR:
fam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
OYT1_ch1887
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
OYT1_ch1887
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OYT1_ch1887
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Glyco_transf_4
DUF4254
Motif
Other DBs
NCBI-ProteinID:
BBE51414
UniProt:
A0A2Z6GDL9
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All DBs
Position
complement(1849675..1851465)
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AA seq
596 aa
AA seq
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MPRIATRNYSAETAQTLADSGITPLLARVYAARGVTHADELAGGLTRLLSFETMKGITAM
AVRLADAIADGKKLLVVADYDADGATACAVAVRGLQMFGARVEFIVPNRFEYGYGLTPQI
VQLAARFEPDIIVTVDNGIASVDGVAEANRLGIEVLVTDHHLPGDELPDAACIVNPNQPG
CPFPSKNLAGVGVMFYVLLSLRAELRQRGVFNSPLPQVGLREGRSEAAGHPPAYSLRVEG
AGERGIQVEPNLATLLDLVALGTVADVVKLDQNNRILVQQGLARIRAGRGCAGINALLKM
ARKQVEQVSSYELGFVVGPRLNAAGRLEDMSLGIRCLLTDDPDEAAELARQLDELNRARR
DIEADMQESALAALEQVDPSDGHTLTLYNEDWHQGVIGILASRLKDRFHRPVIAFARANE
EELKGSGRSIPGLHLRDALDLVSKRHPQLIQKFGGHAMAAGVSVRTEHFEAFRAAFEAVA
QELLSTADLTKVIETDGELTAAEFSLEFARSLEQQVWGQGFPQPSFEGEFGVASQRVVGE
KHLKLKLEREGVPIEAIMFNHADELPPRAHFVYSLSVNEYNGRQSLQLVIQHCEYE
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgccaagaatcgctactcgaaactactccgctgaaacggcccaaacgctagccgattct
gggatcacgccattgcttgcgcgcgtctatgcggcgcgtggcgtgacacatgcggacgag
ttggccggtggtttgacgcggctcttatcgttcgagacgatgaagggcattactgcgatg
gcggtcagacttgcagatgcgatcgctgacgggaaaaaactattggtcgtggctgattac
gacgccgacggcgcgactgcgtgtgccgtggcggtgcgcggcttgcagatgttcggtgcg
cgggtcgagttcatcgtgcccaatcggttcgagtacggctacgggctgacaccgcagatc
gtgcagcttgccgcccgatttgagccagatatcatcgtcaccgtggacaacggcatcgcc
agcgtggacggcgtggccgaagccaataggctcggcatcgaagtgctggtgactgaccac
cacttgccgggagatgagttgccagatgcagcttgcatcgtcaatccgaaccagccgggt
tgcccgttcccaagcaagaatttggcgggcgtgggggtgatgttctatgtgttgctatcg
ctacgggcggagctgcgccagcgcggggtattcaactcccctctcccgcaagtgggactg
cgggaggggcgcagcgaagctgcggggcacccaccggcgtactccttgcgggtagagggg
gcgggggagaggggcatccaagttgagccgaatctagctaccttgctcgacctcgtcgca
ctcggtaccgtcgccgatgtcgtcaaactcgatcagaacaaccgcatcctcgtccagcaa
ggtttggcgcgcatccgtgctgggcgtggatgcgccggtatcaacgcactgctgaaaatg
gcacgcaaacaggtggagcaagtgtctagctatgaactcgggttcgtcgtcgggccgcgt
ttgaacgccgccggacgattggaggacatgagcttgggcatccgctgcctgttgaccgat
gatcccgatgaggctgctgagctggcgcggcagctcgatgagctgaaccgcgcccggcgc
gacatcgaagccgatatgcaggaatctgcgctggcggcgctggaacaggtcgatcccagc
gatggccatacgctcactctatacaacgaagattggcatcagggcgtgatcggcatcctc
gcttcgcgcctgaaagatcgattccatcgtccggtgatcgcgtttgcccgcgccaacgaa
gaggaattgaaaggttctgggcgcagcatccccggcctgcacctgcgcgacgcgctcgat
ctggtgtccaaacgccacccgcagttgatccagaagttcggcggccatgcgatggcggcg
ggcgtgagcgtgcgcaccgagcacttcgaggcgttccgcgcggcattcgaagccgtcgcg
caagagttgctcagcaccgccgacctgaccaaagtcatcgagaccgacggcgaactgact
gccgctgaattttcgttggagttcgctcgttcgcttgaacagcaggtatggggacaaggt
ttccctcagcctagttttgagggagagttcggggtggcgagccagcgtgtggtgggcgag
aagcatttgaagctgaaactggagcgggagggcgtgccgatcgaagcgatcatgttcaac
catgcggacgaactcccgcctcgggcccatttcgtgtacagcctgagtgtcaatgaatac
aatggcaggcaaagtttgcaattggtcatccagcattgtgaatacgagtaa
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