Ferriphaselus amnicola: OYT1_ch2630
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Entry
OYT1_ch2630 CDS
T05631
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fam
Ferriphaselus amnicola
Pathway
fam03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OYT1_ch2630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fam03400
]
OYT1_ch2630
Enzymes [BR:
fam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OYT1_ch2630
DNA repair and recombination proteins [BR:
fam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OYT1_ch2630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
MFD_D3
CarD_TRCF_RID
ResIII
SNF2-rel_dom
ERCC3_RAD25_C
UB2H
AAA_30
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
BBE52142
UniProt:
A0A2Z6GFH0
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All DBs
Position
2596183..2599587
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AA seq
1134 aa
AA seq
DB search
MLFDSTHSRPRYANLHGSSDALALAQFARKQSPLVILTADAREAQRLVEELPYFDPKLRV
HLLPDWETLPYDHFSPHQDLVSERLATLHHVRTSAYDVLIVPVTTALYPLPPVSYMAAYT
FFMNKGERLVLDAFRAQMTLAGYTHVQQVLTPGEYCVRGGLIDLFPMGSPVPYRIDLFDD
EIETIATFDVDTQRTIYPVPDIRLLPAREFPLDEAGQARFRKNFRERFEGDPSKAGIYKD
VSKGIAPAGIEYYLPLFFDETATLFDYLPPNATLCLHHAVNDAITEFGKDAANRYKLLRG
DPQRPLLEPHELFMDGEQFFGRVKEFGRVDVVDKDEGSTLTSCPTTPIPPIAVDRKAEVP
VLAFQSFIRNQIGRVLLLAESLGRREIMAGYLREYGLTPETCESYAEFEQGKAAFMLGVA
PLQRGFTLTDTQLAIVTETELYASQPKSRNTRSTKKSSVEGMLRDLSELKPGDAVVHEQH
GIGRYMGLVTLDLGEGGNEFLLLQYSGEDKLYVPVSQLHVISRYSGGAAEDAPLHKLGSG
AWDKAKRRAMQQVRDTAAELLNLYAQRATRKGHAFKLTYHDYEAFAAGFGFEETPDQAAA
IEAVILDLQSGKPMDRLICGDVGFGKTEVALRAAFVAAMEGKQVAVLAPTTLLVEQHYQN
FSSRFADWPVRIAELSRFKSTKETTQALKDLAEGKVDIVIGTHKLIQKDIKFSNLGLVII
DEEHRFGVQQKERLKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQRRLSIKT
FVSGYSQGVIREAVLRELKRGGQVYFLHNEVDTMPNMLEKLTTLLPEARIRMAHGQMGER
ELESVMRDFTHQRFNVLLCSTIIETGIDVPSANTIIMNRADRFGLAQLHQLRGRVGRSHH
QAYAYLLVDSLDGLTAQAKKRLEAIQAMEQLGSGFYLAMHDLEIRGAGEVLGESQSGEMQ
EIGFALYTDMLNAAITSLRQGHEPDMAHPLGVTTEINLHTPALLPNDYCGDIHQRLVLYK
RLASCTSLDELETMQAELIDRFGLLPDAAEALLLCHQLRIAAKPLGIAKLDASSEAIQIQ
FVPNPPIDPTKIIKLIQTKRHYKLVGQDKLRIELKYHDLTQRVLAIRSFFGELK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgctgttcgattccacccattcccgcccgcgctacgccaacctgcacggctcgtccgat
gctttggcgctggcacaattcgcccgcaaacagtcgccgctggtgatcttgacggcggat
gcgcgcgaggcacagcggctggtggaagagctgccttactttgaccccaagctgcgcgtg
catctgctaccagactgggaaacgctgccctacgaccatttctcgccgcatcaggacttg
gtctccgaacgcctcgccacgctgcaccatgtccgcaccagtgcctatgacgtgttgatc
gtaccggtgaccaccgcgctctacccactgccgccggtgagttacatggcggcctacacc
ttcttcatgaacaagggcgagcggctggtactggatgctttccgcgcgcagatgacgctg
gcaggctacacccacgtgcagcaggtgctcacccccggcgagtattgcgtgcgcggcggg
ctgatcgacctgttcccgatgggtagcccagtgccgtaccgcatcgacctgttcgatgac
gagatcgagaccatcgccacctttgacgtggacacgcagcgcaccatctaccccgtgccg
gacattcgcttgctgcccgcgcgcgagtttccattggacgaagctgggcaggcgcgcttc
cgcaagaatttccgcgaacgctttgagggcgacccctccaaagccggcatctacaaggat
gtgagcaagggcatcgccccagccggcatcgagtactacctgccgctgttcttcgacgag
accgccacgctgttcgactacttgccgcccaacgccacgctgtgcctacaccacgccgtg
aacgatgccatcaccgaattcggcaaggatgcggccaaccgctacaaactgctgcgcggc
gatccgcaacgcccgctgttggagccgcatgagctgttcatggatggcgagcagtttttt
ggacgggtcaaggaatttggacgggtagatgtcgttgataaagacgaaggctccacgctg
acaagctgtcccacgacgcccattccgcccatcgccgtggatcgcaaggcggaggtgccg
gtgttggcgtttcagtccttcatcagaaatcagatcggacgggtgttgctgctggcggaa
tcactggggcggcgcgagatcatggcgggctatctgcgcgagtacgggctaacgccggag
acgtgcgagagctacgccgaattcgagcaaggcaaagcagcgttcatgctgggtgtcgct
cccttgcaacggggcttcacgctcacggacacacagttagccatcgttaccgagaccgag
ctgtacgcctcccagcccaagagccgtaacacacgcagcaccaaaaagagcagcgtcgaa
gggatgctgcgcgatttgtccgagctcaagccgggcgacgcggtcgtgcatgagcagcac
ggcatcggacgctacatgggcttggtcacgctggatttgggcgagggcggcaacgaattc
ctgctgttgcaatattcgggcgaggacaagctctacgtacccgtgtcgcaactgcacgtc
atcagccgttacagcggcggtgcggcggaagatgcgccattgcacaagctgggcagcggc
gcatgggacaaggccaagcgccgagccatgcaacaggtgcgcgataccgctgccgaacta
ctgaacctctacgcccagcgcgccacgcgtaagggtcacgctttcaagctgacctaccac
gactacgaggccttcgccgctggcttcggtttcgaggaaacgcccgatcaggccgccgcc
atcgaggctgtcatcctcgacctgcaatccggcaagccgatggataggttgatctgcggc
gacgtgggattcggcaagaccgaggttgcgctgcgcgccgccttcgtcgccgcgatggaa
ggcaagcaggtagcggtgttagcccccactacgctgctggtcgagcagcattaccaaaat
ttctccagccgcttcgccgattggccggtgcgtatcgccgagctgtcccgcttcaagtcg
accaaggaaaccacgcaggcgctgaaagacttggccgagggcaaggtggacatcgtgatc
ggcacacacaagctgatccagaaagacatcaagttctccaacctcgggctggtcatcatc
gacgaagagcatcgcttcggtgtgcagcagaaagagcgcctgaaagcgctgcgcgccgaa
gtggacgtactgacgctaaccgccacgccgatcccgcgcacgctagcgatgtcgctggaa
gggctgcgcgacttctcggtgatcgccactgcgccgcagcgccgcttgtcgatcaagacg
ttcgtcagcggctacagccagggcgtgatccgcgaagcggtgctgcgcgaattgaagcgc
ggtgggcaggtgtacttcctgcataacgaagtggacaccatgcccaatatgctggagaag
ctgaccaccttgctgccggaagcgcgcatccgcatggcacacggtcagatgggcgagcgc
gaactggagtcggtgatgcgcgacttcacccaccagcgcttcaatgtgctgctgtgctcc
accatcatcgagaccggcatcgacgtgcccagcgccaacactatcatcatgaaccgcgcc
gaccgcttcggcctcgcgcagttacaccagttgcgtggtcgcgttgggcgttcgcaccat
caggcttacgcctatctgctggtggatagtctggacgggctgaccgcgcaggccaagaaa
cgtctcgaagcgattcaggcgatggagcaattgggcagcggcttttatctcgccatgcac
gatctggagatacgcggcgcgggcgaggtgctgggcgaatcacagagcggtgagatgcag
gagatcggcttcgccctttataccgacatgctcaacgctgccatcacttctctgcggcaa
ggccacgagcctgacatggcacacccgctgggcgtcaccaccgagatcaatctgcacaca
ccggcgctgctgcccaacgattactgcggcgacatccaccagcggctggtgttgtacaag
cggctggcgagctgcacttcactggacgaactggagaccatgcaagccgagttgattgac
cgcttcggcctgctgccggacgccgccgaagcgctgcttctatgccaccagctacgtatc
gccgccaagccattgggcatcgccaaactggacgcttcctcggaggctatccagatccaa
ttcgtgccgaatccacccatcgatccgacgaagatcatcaaattgatccagaccaagcgt
cactacaagttggtaggacaggacaagctgcgtatcgagttaaagtatcacgacctcacc
caacgagtgctggcgatcagaagtttctttggggagttaaagtga
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