Flavobacterium ammoniigenes: GENT5_03560
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Entry
GENT5_03560 CDS
T08752
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fan
Flavobacterium ammoniigenes
Pathway
fan03410
Base excision repair
fan03430
Mismatch repair
fan03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GENT5_03560 (recJ)
03430 Mismatch repair
GENT5_03560 (recJ)
03440 Homologous recombination
GENT5_03560 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fan03400
]
GENT5_03560 (recJ)
DNA repair and recombination proteins [BR:
fan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GENT5_03560 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GENT5_03560 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GENT5_03560 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
ddrB-ParB
SIR4_SID
Motif
Other DBs
NCBI-ProteinID:
BDB54051
LinkDB
All DBs
Position
417876..419564
Genome browser
AA seq
562 aa
AA seq
DB search
MRWTIKPKPAPEQVRQLAQELNVDPLIATLLIQRNITSFDKAKAFFRPSLDHLHDPFLMK
DMDVAVNRIEQAMANQENILVFGDYDVDGTTAVSLVSSYLKSIYPHIATYIPDRYAEGYG
ISFQGIDFAEDNGFSLIIALDCGIKSIEHVAYAKEKKIDFIICDHHRPGDSLPDAVAVLD
PKRDDCRYPYDELCGCGVGFKLIQALSQNQNQTMNDLIPYLDLVATAIAADIVPITGENR
VLAHFGLQVINEAPRPGIQALIQQIKKQTLTITDVVFVIAPRINAAGRIKHGNHAVELLT
EFNLEQAQQFAKEIEDYNSERKGLDKQITQEALQQIENNKEQDSFTTVVFQENWHKGVIG
IVASRLIETYYRPTLVFTKSGDYYAASARSVRGFDVYNALEACSEHLEQFGGHMYAAGMT
LKVENYEAFKNAFEKVVQETMNPELRTPEMEIDAEIDFSEITPKLVRILKQFEPFGPQNM
TPVFATQNVMDTGYPKYMGANEEHIRLFVKQQHSDGFAAIGFNLAHKKNVIANRNPFQMA
YCIDENEWNGQISLQLRLKDIQ
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggactatcaaaccaaaacccgccccagaacaagttcgtcaactcgcgcaagaa
ctcaatgtagatccattgatcgccactttattgattcagcgtaatattacctcttttgat
aaagccaaagctttctttcgcccctcactcgatcatttacacgatccgttcttgatgaaa
gatatggatgtggctgtcaaccgaatcgaacaagccatggccaaccaagaaaatattttg
gtttttggcgattatgacgtagacggaacgactgcagtttccttggtgtcatcctattta
aaaagtatttatccccatattgcaacctatattccagatcgctatgccgaaggttacggc
atttctttccaagggattgactttgccgaagacaatggtttttcgttgattattgccttg
gactgcggtatcaaatcgattgaacatgtggcttacgccaaagaaaaaaaaattgatttc
atcatttgtgatcaccatagacctggcgattcactaccggatgcagttgctgttctcgac
ccaaaaagagacgattgtaggtatccatacgacgaattgtgtggatgtggtgtcggtttc
aaattgattcaggctttaagccaaaatcaaaatcaaactatgaatgatttgattccgtat
ttggatttagttgccaccgccattgctgctgatattgtaccaataacaggcgaaaataga
gtgttggcacattttggtttgcaagtgatcaacgaagcgccaagacctggaatccaagct
ttgatccaacaaattaaaaaacaaacccttaccatcaccgatgtcgtttttgtcattgcg
cctcgtatcaatgccgccggacgcatcaaacacggtaatcatgcggtagaattgttaacc
gaatttaatttggaacaagcccaacaatttgccaaagaaattgaagactacaattcggaa
cgcaaaggcttggacaaacaaattacccaagaagcgctacaacaaattgaaaacaacaaa
gaacaagacagttttacgactgtggtttttcaagagaattggcacaaaggtgtgatcgga
attgttgcgtcacgattaattgaaacctactatagaccgactttagtgtttactaaaagt
ggcgattactacgccgcatcggcccgatcggttcgtggttttgatgtgtacaatgcacta
gaagcttgttcagaacatttggaacaatttggcggacatatgtatgcggcaggaatgacc
ttgaaagtagaaaattatgaggctttcaaaaatgccttcgaaaaagtagtacaagaaact
atgaatcctgaattgcgcactcccgaaatggaaatcgatgccgaaattgatttttcggaa
atcactccaaaactcgttcggattttaaaacaattcgaaccttttggcccacaaaatatg
acacccgtttttgccactcaaaatgttatggacaccggttatccaaaatatatgggcgcc
aatgaagaacacatccgcctttttgtaaaacaacaacattcagatggctttgcagctatt
ggttttaatctggcgcataagaagaatgtaattgccaatagaaatccatttcaaatggcc
tattgcattgatgaaaatgaatggaacggccaaataagcctacaactccgactaaaagat
attcaataa
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