Flavobacterium ammoniigenes: GENT5_10480
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Entry
GENT5_10480 CDS
T08752
Symbol
recQ1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fan
Flavobacterium ammoniigenes
Pathway
fan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GENT5_10480 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fan03019
]
GENT5_10480 (recQ1)
03400 DNA repair and recombination proteins [BR:
fan03400
]
GENT5_10480 (recQ1)
Enzymes [BR:
fan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GENT5_10480 (recQ1)
Messenger RNA biogenesis [BR:
fan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GENT5_10480 (recQ1)
DNA repair and recombination proteins [BR:
fan03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GENT5_10480 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Glyco_hydro_95_cat
Motif
Other DBs
NCBI-ProteinID:
BDB54743
LinkDB
All DBs
Position
1188878..1191073
Genome browser
AA seq
731 aa
AA seq
DB search
MNSNEIDIHKELKKYFGFGQFKGLQEPVIKSILNKENTFVIMPTGGGKSLCYQLPALIQE
GTAIVVSPLIALMKNQVDAIRSLSSENGIAHVLNSSLTKTEITQVKNDITAGITKLLYVA
PESLTKDEYVQFLQSVKVSFVAIDEAHCISEWGHDFRPEYRNLRHIIKQLGDVPIIGLTA
TATPKVQEDILKNLDMSDATTYKASFNRPNLYYEVRTKTKNIESDIIRFIKQNKGKSGII
YCLSRKKVEAIAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVEVVVATIAFGMGID
KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAEQE
IGFALLQEVVAYAETSMSRRKFLLHYFGEEFDSETGEGADMDDNVRNPKNKVEAKNQVVQ
LLQVVRDTKHLYKSKEVVFTLIGRVNAVIKAHKTDSQSFFGCGADQDEKYWMALLRQVLV
EGYLAKDIETYGIVKITDKGLDFIKNPVSFMMSEDHEYNESEDDAIVSAASSSGTADEAL
MAMLRELRKKEAKTIGVPPFVVFQDPSLEDMALKYPISLEELTNIHGVGEGKAKKYGAPF
VALINRYVEDNDIIRPDDLVVKSTGVNSANKLYIIQNIDRKLSLDDIASAKGMSMDDLIK
EMEQIVYSGTKLNIKYWIDDMLDDDQQEEIHEYFMESDSDKIEDALKEFDGEFDIDELRL
MRIKFISEVAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaaacgaaattgatatccataaagaattaaagaagtattttggcttcggacaa
ttcaaaggactgcaagaacctgtaattaaaagtattctcaataaagaaaatacttttgta
attatgcccacgggaggcggtaaatcactttgttaccaattgcctgccttgattcaagaa
ggtactgccattgtagtgtctccattaattgctttaatgaaaaatcaagtagatgctatt
cgaagtttgtcttctgaaaacggcattgctcatgtgttgaattcttctttaacaaaaacc
gaaattacacaggtaaaaaatgatattactgcgggtattaccaaattgttgtatgttgcc
ccagaatccctaaccaaagacgaatacgttcaatttcttcaatcggttaaagtatctttt
gttgctatagacgaagcccattgtatttcagaatggggtcatgattttagaccggaatat
cgaaatttacgacacattatcaaacaattgggcgatgttcccattattggtttgaccgct
acggctacaccaaaagtgcaagaggatatcttgaaaaacttggacatgtcagacgcaact
acttataaagcgtctttcaaccgacctaatttatattacgaagtacgtactaaaacgaaa
aatatcgaatcggatatcattcgttttatcaaacaaaataaaggaaagtcaggaattatc
tattgtttaagccgtaagaaggtagaagcaattgccgaggtgttacaggtaaatgggata
agtgcagtgccgtatcatgctggtttagatgctaaaaccagagccaaacaccaagatatg
tttttgatggaagatgtggaagtggttgtggcaactattgcttttggtatgggaatcgac
aaaccggatgtgcgttttgtaattcatcatgacattccaaaatctttagaaagttattac
caagaaacgggtcgtgcaggtcgcgatggaggagaaggtcattgtttggcgtattattcg
tacaaagacgtagagaaattagaaaaattcatgtcgggcaaaccagtcgctgaacaagaa
attggatttgcattattacaagaagtagtggcctatgccgaaacttcaatgtcaagacgt
aaatttttattgcattattttggtgaagaattcgatagcgaaacgggagaaggtgctgac
atggatgacaatgttcgcaatccgaaaaacaaagtcgaagccaaaaaccaagtcgtgcaa
ttactccaagtggtaagagatactaaacatttatataagtctaaagaagtagtctttact
ttgataggtcgagtaaatgctgtgattaaagcacacaaaaccgattcacaatcctttttt
ggctgtggtgccgatcaagatgaaaaatattggatggctttgttacgccaagtcttggta
gaagggtatttagccaaagatattgaaacctacggtatcgtaaaaatcacggacaaagga
ttggattttattaaaaatccagtttccttcatgatgtcggaagatcatgaatacaatgaa
agcgaagacgacgcaattgtaagtgcagccagttcctctggaactgctgatgaagctttg
atggccatgttgcgagaattgcgtaagaaagaagcgaaaacaataggtgtaccacctttt
gtggtgtttcaagacccatcattggaagatatggcgttgaagtaccctatttctttggaa
gaattaacgaatatccacggagtgggtgaaggtaaagccaagaaatatggagcccctttt
gtagctttaataaatcgttatgtagaagacaacgatatcatacgtccagatgatttagtg
gtaaaatctaccggagtcaattcggcgaataaattgtacatcattcaaaatatcgatcga
aaattatcactagatgatattgcttccgccaaagggatgtcgatggatgatttgattaag
gaaatggagcagatcgtatattcgggtaccaaattgaatatcaaatattggattgacgac
atgttagacgacgatcagcaagaagaaattcatgagtattttatggaatcagactctgac
aaaatagaagatgcgctgaaagaatttgatggggaattcgatattgatgaattgcgtttg
atgcgtattaaattcattagtgaagtagccaactaa
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