Flavobacterium ammonificans: SHINM13_00240
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Entry
SHINM13_00240 CDS
T08737
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fao
Flavobacterium ammonificans
Pathway
fao03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SHINM13_00240 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fao03021
]
SHINM13_00240 (rpoC)
03400 DNA repair and recombination proteins [BR:
fao03400
]
SHINM13_00240 (rpoC)
Enzymes [BR:
fao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SHINM13_00240 (rpoC)
Transcription machinery [BR:
fao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SHINM13_00240 (rpoC)
DNA repair and recombination proteins [BR:
fao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SHINM13_00240 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
RPOC_hybrid
Peptidase_M23
SGBP_BT4661-like
Motif
Other DBs
NCBI-ProteinID:
BDB55728
LinkDB
All DBs
Position
complement(28117..32427)
Genome browser
AA seq
1436 aa
AA seq
DB search
MMNNRNNNKDKNPVKRFNKISIGLASPESILKESRGEVLKPETINYRTHKPERDGLFCER
IFGPVKDFECACGKYKRIRYKGIICDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSL
PNKIGYILGLPSKKLDMIIYYERYVVIQAGIAQNAEGEPVQRLDFLTEEEYLNILDTLPA
DNQYLDDFDPNKFVAKMGAECIMDLLARIDLDELSYSLRHSANNETSKQRKTEALKRLQV
VESFRESNLNRENRPEWMIMKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRL
KRLMEIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFR
QNLLGKRVDYSARSVIVVGPELKLFECGIPKDMASELYKPFVIRKLIERGIVKTVKSAKK
IIDKKEPVVWDILENVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNA
DFDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERLS
TPEHKILGQDLTFYSAEEVNIALNEGQLELNARVKIRAKDFNENGELVYKIIQTTAGRVL
FNEVVPEAAGYINDVLTKKNLRDIIGHILSVTDVPTTAAFLDNMKDMGYKFAFKGGLSFS
LGDIRIPDQKPQLIADARAQVEGISANYNMGLITNNERYNQVIDVWTSTNAQLTEAAMKN
IREDQQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKE
GLSILEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNIDDCGTLRGVEVSAL
KKNEEIVESLGERILGRVALQDVINPLDNEVLVASGEQITEAIVKAIEASPIEKVEVRSP
LTCEALKGICAKCYGRNLATGKITQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGIS
EESSIIARFPGKLEIEDLKTVKGEDSEGNAVDIVVSRSTELKLIDEKTGILLSTNNIPYG
SSIFVKDGQSVAKGEVICKWDPYNGVIISEFTGKIAYEDLEQGQSFMVEIDEQTGFQEKV
ISESRNKKLIPTLLVYGKDNELIRSYNLPVGAHLMVDDGEKIKAGKILVKIPRRSSKSGD
ITGGLPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIIIESKFGEVKKYLVKLSS
QILVQENDFVKAGVPLSDGAITPDDILRIQGPAAVQQYLVNEIQEVYRLQGVKINDKHFE
VVIRQMMRKVRVQDPGDTLFLEDQLIHTKDFILENDKLYGMKVVEDAGDSDTLKPGQIIT
PRQLRDENSLLKRTDKNLVVARDVITATATPVLQGITRASLQTKSFISAASFQETTKVLN
EAAVAGKVDYLEGLKENVIVGHRIPAGTGMREYDHTIVGSKDDYNEMMANKEEYIY
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgatgaataatagaaataacaataaggataagaacccagttaaaaggttcaataaaatt
tcgataggacttgcttctcctgaatccatcttaaaagaatcaagaggtgaagtgttaaag
cctgaaactatcaactacagaacgcacaaaccagagcgtgacggacttttctgcgaaaga
atttttggtcctgttaaggattttgaatgtgcttgtggaaaatacaaaagaattcgttat
aaaggaattatttgtgaccgatgtggtgtagaagttacggagaaaaaagtacgtagagat
agagtaggacacatcaaccttgttgtgccaattgctcatatctggtatttccgttcgctt
ccaaacaaaattggatacatccttggattaccgtctaagaaattagacatgattatttac
tacgaaagatacgtagtaatccaagcgggtattgctcaaaatgctgaaggagaaccagta
caacgattagatttcttgacagaagaagagtatttgaatattttagatacacttcctgct
gacaatcaatatttagacgattttgatccaaataaatttgttgccaaaatgggagcagag
tgtattatggatttattagcacgtatcgacttagacgagttatcatacagtttacgtcat
agtgctaacaatgaaacgtctaaacaacgtaaaacagaagcattaaaaagattacaagtt
gtagaatctttccgtgagtctaacttgaaccgtgagaaccgtcctgagtggatgattatg
aaagtagttccagttattccaccagaattacgtccgcttgtgccactagatggaggtcgt
tttgctacttctgatttgaatgatttataccgtcgtgtaattatacgtaacaaccgtttg
aaaagattgatggagattaaagctcctgaagttatcttgagaaacgaaaaacgtatgttg
caagaatctgtggattcacttttcgataatactcgtaaagcatctgcagtaaaaacagaa
tcaaacagaccattaaaatcattatctgattcattgaaaggtaagcaaggacgtttccgt
caaaacttacttggaaaacgtgttgattattctgctcgttcggtaattgttgttggacct
gagttgaaattatttgaatgtggtatcccaaaagatatggcatctgaattgtacaaacct
tttgtaatccgtaaattgattgaaagaggtattgttaaaacggtaaaatcagctaaaaaa
ataattgacaaaaaagagcctgtagtttgggacatccttgaaaatgtaattaaaggacac
ccagtattactgaatcgtgctcctactttgcaccgtttaggtatccaagcgttccagcca
aaattaattgaaggaaaagcaatccaattgcaccctttagtgtgtacggcatttaacgcg
gattttgatggtgaccagatggcggttcacttgccattaggaccagaagcaatcttggaa
gcacaattattaatgttggcttctcacaatattttgaaccctgctaatggagcgcctatc
acggtaccttctcaggacatggttttgggtctgtattatatgaccaaagaacgtttatca
actcctgagcataaaattttaggtcaagatttgactttctattctgctgaagaggtaaac
atcgcattaaacgaaggacaattagaattgaatgctcgtgtaaaaattagagcaaaagat
tttaacgaaaatggagagttggtttacaaaataatccaaactactgcgggtcgtgtcttg
tttaatgaagtagttcctgaagctgctggatatatcaatgatgtattaactaagaaaaac
ttaagagatattattggtcacattttaagtgtaactgatgtacctactacagctgctttc
ttggataatatgaaagatatggggtacaaatttgcctttaaaggtggattgtcattctca
ttaggagatattcgtattccagatcaaaaaccacaattaattgcagatgctagagcgcaa
gttgaaggtatttctgctaactataacatgggtcttatcaccaataacgaacgttataac
caagttattgatgtatggacttcaaccaatgctcaattgacagaggcagcaatgaaaaac
attagagaagaccaacaaggtttcaactctgtgtatatgatgcttgattctggagcaagg
ggatctaaagaacaaattcgtcagttgactggtatgcgtggtttgatggctaagccaaaa
aaatcaactgctggtggtggtgaaattattgaaaacccgattttatctaactttaaggaa
ggtctatcgatccttgagtactttatttctactcacggtgctcgtaaaggtctagcggat
accgctcttaaaactgccgatgcagggtacttgacaagaagattacatgacgtttctcaa
gatgttattgtaaacattgatgattgtggtactttaagaggtgttgaagtttctgctttg
aagaaaaacgaagaaatcgtagaatctttaggtgaaagaattcttggacgagttgcatta
caagatgttattaatcctttggataacgaagtattagttgcatctggagaacaaataaca
gaagcaattgttaaagcaattgaagcttcgccaattgaaaaagttgaagttcgttctcca
ttaacttgtgaggctttaaaaggaatctgtgctaaatgttacggtagaaacttagctact
ggaaaaattacgcaaagaggagaagctgttggtgtaattgctgctcaatctattggagag
cctggaacacaattgacacttcgtacattccacgtaggtggggttgcgggaggtatatct
gaggagtcaagtattattgctcgtttcccaggtaaacttgaaatcgaggatttaaaaaca
gttaaaggagaagatagcgaaggaaacgctgtggatattgttgtttctcgttctactgaa
ttgaaattaatcgatgaaaaaacaggtattttattaagtacaaataatatcccttacggt
tctagtatttttgtaaaagacggacagtcagttgcaaaaggagaagtaatctgtaaatgg
gatccatataatggagttattatttccgagtttactggtaaaattgcttatgaagattta
gagcaaggacaatcgttcatggtagaaattgatgagcaaactggtttccaagaaaaagta
atttctgagtcaagaaacaaaaaattaattccaactttattggtttacggtaaagacaat
gaattgattcgttcgtacaacttacctgttggagctcacttgatggttgatgatggcgag
aaaattaaagccggtaagattttagttaaaattccacgtcgttcttctaaatctggagat
atcactggaggtttaccaagaattaccgagttgttagaagctcgtaatccatcaaatcca
gctgtagtgtctgaaattgatggtgttgtatctttcggaaaaatcaaacgtggtaatcgc
gaaatcatcatcgaatctaaatttggtgaagtgaagaaatacctagttaaattatctagt
caaatcttggttcaagaaaatgactttgtaaaagcaggtgttcctttgtctgatggtgct
attactcctgatgatattttgagaattcaagggccagctgctgtacaacagtacttggta
aatgaaattcaagaagtataccgtttacaaggggtaaaaattaacgacaaacactttgaa
gtagttattcgtcaaatgatgcgtaaagtacgtgttcaagatccaggagatactttgttc
ttagaagatcaattaatccatactaaagatttcatcttagaaaacgataagttatacgga
atgaaagtggtagaagatgcaggtgattctgatacattgaaaccaggacaaattatcaca
ccgcgtcagttgcgtgatgaaaactcattgttaaaacgtacagataaaaacctagttgta
gcacgtgatgtaattacagcaactgctacgccagtacttcaaggtataactagagcatct
ttacaaacgaaatcattcatttcagcagcttctttccaagaaactactaaagtattaaac
gaagctgcagtagcaggtaaagttgattacttagaaggtctgaaagaaaatgtaattgta
ggtcacagaattccagcaggtacaggtatgagagaatacgatcatactattgttggatct
aaagatgattacaatgaaatgatggctaacaaagaggagtatatttattaa
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