Flavobacterium ammonificans: SHINM13_00890
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Entry
SHINM13_00890 CDS
T08737
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
fao
Flavobacterium ammonificans
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fao03032
]
SHINM13_00890 (topA)
03400 DNA repair and recombination proteins [BR:
fao03400
]
SHINM13_00890 (topA)
Enzymes [BR:
fao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SHINM13_00890 (topA)
DNA replication proteins [BR:
fao03032
]
Prokaryotic type
DNA Topoisomerases
SHINM13_00890 (topA)
DNA repair and recombination proteins [BR:
fao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SHINM13_00890 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Poly_export
HC2
PvlArgDC
Motif
Other DBs
NCBI-ProteinID:
BDB55793
LinkDB
All DBs
Position
complement(105794..108313)
Genome browser
AA seq
839 aa
AA seq
DB search
MAKNLVIVESPAKAKTIEKFLGSDFQVESSYGHIADLPSKEIGVDVENGFKPKYEVSADK
KALVSKLKTLSKNAEMVWLASDEDREGEAISWHLSEELKLDKKKTKRIVFHEITKTAILK
AIDNPREIDYNLVNAQQARRVLDRLVGYELSPVLWRKVKGGLSAGRVQSVSVRLIVERER
EIQNFKPVASYSVTAEFTNEAGKIVKAKLPKNFNTKKEAEDFLQKNSASNYKVGELETKP
TKKSPTAPFTTSTLQQEAARKLYLPVGITMQLAQRLYEAGLITYMRTDSVNLSKDAMDAA
QAEIIKSYGKEFSKPRTFANKSKGAQEAHEAIRPTDMSRHTVNIDRDQARLYDLIWKRTL
ASQMSDAELERTNVKIEANNHSEVFTASGEVLLFEGFLKVYLEGNDEDDEEQEGMLPALK
VNERLDNNYITATERYSRAAARYTEASLVKKLEELGIGRPSTYAPTISTIINRNYVEKGN
LEGQERKYTQLTLQAGKVVEKVLKENTGSDKGKLVPTDIGTIVTDFLVKNFGAILDYNFT
AKVEQDFDEIAEGNIEWAKMMQEFYDKFHPNVKDVEANADRESGERILGTDPASGKPVSV
RLGKFGPMAQIGDAEDEDKKFASLKIDQNIGNITLEDALNLFLLPKNLGLYKGEEVEVSN
GRYGPYVRHGSAFISLPKGEDPLDVSMVRAQELIDEKAQADAPIATYKGLGVQKGVGRFG
AFIKWDGLFINVSKKYNFDNLSQADIEELIEDKLQKNIDKVLHNWTEEGILVEKARWGRS
VITKGKIKIELSKDVDASKLTLEEVQEMIAKKAPAKKVAAKKAPAKKASASKKPIAKKK
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaatttagttatagtggaatcacctgcaaaggctaaaacaatcgaaaaattc
ctaggaagtgactttcaagttgagtcaagttatggtcatattgccgacttgccttccaaa
gaaattggtgtagatgttgaaaatggtttcaaacctaaatacgaagtttctgccgataaa
aaagcattggttagcaaactaaaaacattgtcaaaaaatgctgaaatggtttggttagct
tccgatgaggaccgtgagggagaagcgatttcttggcacttatccgaagaattaaaatta
gacaaaaagaaaacgaaacgtatcgtttttcacgaaattacaaagacggctattctaaaa
gccattgataatcctcgcgaaattgactacaatttagtaaacgcacaacaagcgcgtcgt
gttttagaccgattggttgggtatgaattgtcaccagttttatggagaaaagtaaaagga
ggtctttcagctggtcgtgtacaatctgtttctgttcgtttgattgtagaacgcgaacgc
gagatacaaaactttaaaccagttgccagttattcagttactgctgagtttactaatgaa
gcaggaaaaattgttaaggcgaagttgcctaaaaatttcaataccaaaaaagaagcagaa
gattttttacaaaaaaacagtgcttccaactataaagtaggtgagttagaaactaagcct
acaaaaaaatcaccaactgcgccatttactacttctactttacaacaagaagccgctcgt
aaattgtatttacctgttggaattacgatgcagttagcgcaacgtttgtatgaggcgggg
ttaattacctatatgagaacggatagtgtcaacttgtccaaagatgcaatggacgcagca
caggctgagatcattaagtcttacggtaaagaattttcaaaaccacgtacgtttgccaat
aagagtaaaggcgctcaagaagcccacgaagccattcgtccaacagatatgtcacgtcac
acggtaaatattgaccgagatcaagcgcgtttgtatgatttgatttggaaacgaacttta
gcttcgcaaatgagtgatgccgaattagaacgcaccaatgttaaaattgaagccaataat
catagtgaagtctttacagcttcgggagaagttttactttttgaaggtttcttgaaagtg
tatttggaaggaaatgacgaagatgatgaagaacaagaaggcatgttgccagcactaaaa
gtaaacgaaagattagataataattatattacagctaccgaaaggtattcaagagctgca
gctagatatacggaggcttctttggttaaaaaactagaagaattaggaattggtcgtcct
tcaacctacgcgccaacaatttctacaattatcaatagaaattatgttgaaaaaggaaat
ttagaaggacaagaaagaaaatacactcaactaactttgcaagctggtaaagtagtggag
aaagtattaaaagaaaatacaggttctgataaaggaaaattagttccaacagatattgga
actatagtcaccgatttcttggttaaaaatttcggagcaattttagattataatttcaca
gcaaaagtggagcaagattttgacgaaattgctgaaggaaatattgaatgggcaaagatg
atgcaggagttttacgataaatttcacccgaatgtgaaagacgtagaagcgaatgctgat
agagaaagcggtgaacgaattttgggtacagatccagcttcaggaaaaccagtttctgtt
cgtttaggaaaatttggacctatggctcaaattggagatgctgaagacgaagacaagaaa
tttgcgagtttaaaaatcgatcaaaatattggaaacattactttagaagatgccttgaat
ttatttttattacctaaaaatttaggtttgtacaaaggagaagaggtagaagtgagtaat
ggtcgttacggaccatacgttcgtcatggttctgctttcatttcgttgccaaaaggcgaa
gatccattagatgtttcaatggtaagagctcaggaattgattgatgaaaaagctcaagcc
gatgctccaattgctacttataaaggcttaggtgtgcaaaaaggtgttggacgttttggc
gcttttattaaatgggatggtctttttattaacgtaagtaagaaatacaattttgacaac
ttatctcaagctgatatcgaagaattgattgaagataaattgcaaaaaaatatagataaa
gtacttcacaattggaccgaagaagggattttagttgaaaaagctcgttggggacgctct
gtgattactaaaggtaaaatcaaaattgaattgagtaaagatgttgatgcaagtaaattg
acattggaagaagttcaggaaatgattgccaaaaaagcgcctgcaaagaaagtagcagcc
aaaaaagctccggcaaaaaaagcgtcggcttcaaaaaaaccgattgctaaaaagaagtaa
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