Flavobacterium ammonificans: SHINM13_02570
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Entry
SHINM13_02570 CDS
T08737
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
fao
Flavobacterium ammonificans
Pathway
fao03030
DNA replication
fao03410
Base excision repair
fao03420
Nucleotide excision repair
fao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHINM13_02570 (polA)
03410 Base excision repair
SHINM13_02570 (polA)
03420 Nucleotide excision repair
SHINM13_02570 (polA)
03440 Homologous recombination
SHINM13_02570 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fao03032
]
SHINM13_02570 (polA)
03400 DNA repair and recombination proteins [BR:
fao03400
]
SHINM13_02570 (polA)
Enzymes [BR:
fao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SHINM13_02570 (polA)
DNA replication proteins [BR:
fao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SHINM13_02570 (polA)
DNA repair and recombination proteins [BR:
fao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SHINM13_02570 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SHINM13_02570 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_2
RNase_H_2
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BDB55961
LinkDB
All DBs
Position
306226..309054
Genome browser
AA seq
942 aa
AA seq
DB search
MSIQKRLFLLDAYALIFRGYYAFIKNPRINSKGLDTSAIMGFMNSLMDVIKREKPDHLAV
AFDKGGSDLRNDIYPEYKAHRDATPEAIKIAVPYIQELLRAMHIPIIEVSGYEADDLIGT
IAKQAEKQNYQVFMVTPDKDFAQLVSENIFMYKPARMGNGIEIWGIPEVLAKFEIERPEQ
VIDFLGMMGDAADNIPGLPGVGEVTAKKLLKEFGSMENLLANTDKLKGKMKDNIEANKEK
GLLSKTLATILLDCPVQFNETDYELSTPDVEKTDALFNELEFRRMAEQFDAIFRKGESLP
AVDEAKLYKKPQPKSEDQFDLFGSAIDEGSEETRHQYYNTLENTEHSYQIIQGDLGIKLL
LQNLQNQKSVCFDTETTGLDALHAELVGISFSYEKGKGFYVPFPENQTEAQALIEKFIPF
FENENIEKIGQNLKYDLKVLSNYGITVKGKLFDTMIAHYLINPDMRHNMDILSETYLKYA
PQSIEALIGKKGKNQKSMRDVPLEDIKEYAVEDADVTLQLSEIFNAELDKTQTKKLFEEI
EIPLVGVLASMEKEGINLDVPFLKSLSKELGDDIAQLESRIYEIAGEKFNLASPKQLGDI
LFDKLKIGGAKQKKTKTGQYATGEEILSYLAKDNEIVSAILDWRSLIKLQNTYVEALPLQ
VDTKTNRVHTDYMQTVAATGRLSSNNPNLQNIPIRTERGKQIRKAFIPRDENYTLLSADY
SQIELRIIAALCGEENMIKAFQQGEDIHKSTAAKVFNVPLEEVTAAQRSHAKTVNFGIIY
GVSAFGLSNQTSLSRAESAALIEAYYITYPKLKSYIQDQIESARENGFVQTILGRRRYLK
DINSANAIVRGAAERNAVNAPIQGSAADIIKIAMINIHNRLIAENWKSKMLLQVHDELVF
DVHNSELEKIKPMIKQEMEHAFKLDVPLEVEIGIGKDWLEAH
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattcaaaaacgtctttttctacttgatgcctatgcattaatttttagagggtat
tatgctttcataaaaaacccaagaattaattctaaagggcttgatacttctgctattatg
gggtttatgaattccttgatggatgtaataaaaagagaaaaaccagatcatctagccgtt
gcttttgataaaggcggaagtgatttacgaaatgatatttatccggagtacaaagcacat
cgtgacgcaactcctgaagccattaaaattgcggttccttatatacaagaattacttcga
gcgatgcatattcctattatagaagtaagcggttatgaagcagatgacttaattggcacc
attgcaaaacaagcggaaaaacaaaattaccaagtatttatggtgacgcccgataaggat
tttgctcaattagtttctgaaaatatcttcatgtacaaacctgcccgaatgggtaatgga
atcgaaatatggggaattccagaggttttagcaaaatttgaaatcgaaagacctgagcaa
gtgattgattttcttggtatgatgggcgacgcggcagataatattcctggtttgcctgga
gtaggagaagttactgctaaaaaattattaaaggaatttggttccatggaaaacttattg
gctaataccgacaagttgaaaggaaagatgaaagacaatattgaagccaataaggaaaaa
gggcttttatccaagactttggcgacaattttattagactgtcctgtccaatttaacgaa
acggattacgaattatctactcccgatgtagaaaaaacagatgctttattcaacgaattg
gaatttcgtagaatggcagaacaatttgacgctatttttagaaaaggagaatcattacct
gcagttgacgaagctaaactttataaaaaaccacaaccaaaaagcgaagatcaatttgac
ctttttggtagtgctatcgatgaaggttcagaagaaacgcgtcatcaatattataataca
ttagagaatacggaacattcataccaaattattcaaggcgatttaggaatcaaattatta
ttgcaaaacctgcaaaaccaaaaatcagtttgttttgacactgagactactggattagac
gctttacatgctgaattagttgggatttcgttttcatatgaaaaaggaaaagggttctat
gttccgttcccagaaaatcaaacagaagctcaagccttaattgagaaatttattcctttt
ttcgaaaatgaaaacattgaaaaaatagggcaaaatttaaaatacgacttaaaagtattg
tctaattatggcattactgtaaaaggtaaattattcgatactatgattgcgcattatttg
atcaacccggatatgcgtcataatatggatattttatctgaaacctatttaaaatatgcc
ccacaatctattgaggcattaattggtaaaaaagggaaaaatcaaaaatcgatgcgcgat
gttcctttggaagacatcaaagaatatgcagttgaagatgctgatgtgactttgcaactt
tcagaaatttttaatgctgaattagacaaaacacagactaaaaaattatttgaagaaata
gaaattcctttagttggtgtattggcaagtatggaaaaagaagggattaatttggacgtt
ccatttttaaaatcactttcaaaagaattaggcgatgatatagctcaattagaaagtcgg
atttatgaaattgcgggagaaaaattcaatttggcttctccaaaacaattgggagacatt
ttgtttgacaaacttaaaattggcggtgccaaacaaaaaaagactaaaacaggtcaatat
gctactggtgaagaaattttgagttatttggccaaagacaatgaaattgtaagtgctatt
ttagattggcgttcactaatcaaattacaaaacacctatgttgaagcattgcctttgcaa
gtagataccaaaacgaatcgtgttcataccgattatatgcaaaccgttgccgccacaggt
cgtttgagttctaataaccctaatttacaaaacattccaattcgaacagaacgcggaaaa
caaatcagaaaagcatttattccaagagatgaaaattacactttactctccgccgattat
tctcaaatagaacttcgaattattgccgctttatgtggagaggagaatatgatcaaagct
tttcagcaaggagaagacattcataaaagtactgctgccaaagtgtttaatgtgccttta
gaagaagtaactgcagcacaacgtagccatgctaaaacagttaacttcgggattatatat
ggtgtttcagcttttggtttaagcaatcaaacttcactttctcgtgctgaaagtgctgcg
ttaattgaagcctactacattacttatccaaaactaaaatcctacattcaggatcaaatt
gaaagcgcaagagagaatggatttgtgcaaactattttaggtcgtcgtcgctatttaaaa
gacatcaactcggccaatgccattgtgcgtggtgccgctgaacgaaatgcggtcaacgca
ccgattcaaggtagtgctgctgatattatcaaaatagcgatgatcaatattcacaataga
ttgattgcagaaaattggaaatcaaaaatgttactgcaagttcatgacgaattagtattt
gacgttcacaatagtgaattagaaaaaatcaaacctatgataaaacaagaaatggaacat
gcttttaaattagatgttcctttggaagtagaaattggaatagggaaagattggctagaa
gctcattaa
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