Flavobacterium ammonificans: SHINM13_02960
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Entry
SHINM13_02960 CDS
T08737
Symbol
cafA
Name
(GenBank) ribonuclease G
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
fao
Flavobacterium ammonificans
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fao03019
]
SHINM13_02960 (cafA)
03009 Ribosome biogenesis [BR:
fao03009
]
SHINM13_02960 (cafA)
Messenger RNA biogenesis [BR:
fao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SHINM13_02960 (cafA)
Ribosome biogenesis [BR:
fao03009
]
Prokaryotic type
rRNA processing factors
SHINM13_02960 (cafA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DUF6305
DUF4901
Motif
Other DBs
NCBI-ProteinID:
BDB56000
LinkDB
All DBs
Position
complement(346533..348086)
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AA seq
517 aa
AA seq
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MYSVNKELIIRSSSEAVDFALLKDGKLIELHKEEEKSNFQVGDIFIAKIRKPVAGLNAAF
VNVGFEKDAFLHYHDLGPNLASQLKFIKLVSTGKLKDFSLKTFQFDNEIDKDGTIMDVLS
ANQSILVQVVKEPISTKGPRISAELSLAGRFIVLVPFSDRVSISQKIEDKKEKDRLKRLV
QSVKPKGFGVIVRTVAEGKNTAELEKDLQNLLSRWNAMCKKLPTAHHPSKVLGELNRASS
ILRDVFNDTFSGIQIDDEELYQQTKDYVQEIAPSKESIVKFYQSNDTPIFEKYNIERQIK
TSFGKTVSMSKGAYLIIEHTEALHVIDVNSGNRSNKASNQEDTAMEVNMIAAAEIARQLR
LRDMGGIIVVDFIDMANPENRKVLFDFLREEMSDDKAKHKILPPSKFGLVQITRQRVRPE
MNIKTREEDPNNESGEIEAPILIIDKITLDLERVLKSHSNVVLNVHPFVAAYLTKGFPSI
RSKWFFEHKKWVKIIPRDAYTYLEYHFFDKKGNGISE
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgtacagcgtgaataaagaattaatcattcgatcaagttctgaagccgtagattttgcc
ttattaaaagatggaaaactaattgaattacacaaggaagaagaaaaaagcaactttcaa
gttggtgatatttttattgccaaaataagaaagccagttgctggattgaacgctgctttt
gtaaatgttggcttcgaaaaagatgcctttttacattatcacgacttaggtccaaattta
gcttcccaactgaaattcataaaacttgtaagcacaggtaaattaaaggatttctcccta
aaaacctttcagtttgacaatgaaattgataaagatggcaccatcatggatgttttgagt
gccaaccaatcgattttagtgcaagtcgtaaaagaaccaatatcaaccaaaggaccaaga
attagcgctgagctatctcttgccggacgttttattgtgttagtacctttttctgatcgt
gtttctatttctcaaaaaatagaagacaaaaaagaaaaggaccgtttaaaaagacttgtg
caatcagttaaaccaaaaggatttggtgttattgttcgtacagtagccgaaggcaaaaat
acagccgaattagaaaaagatttgcagaacctgctcagcagatggaatgcaatgtgtaaa
aaattaccaaccgctcatcatccgtcaaaagtattaggagaactcaacagagcttcatct
atcttacgagacgtatttaacgatacctttagtggtattcaaattgatgatgaagagttg
taccaacaaaccaaggattatgtgcaagaaattgcgccatccaaagaatcaattgtgaag
ttttatcaatccaatgatactcccatttttgagaaatacaatatagagagacaaatcaag
acttcgtttggaaaaacggtttctatgagtaaaggagcgtatcttattatcgaacatacc
gaagctttacacgttattgacgtgaatagcggaaatcgttccaataaggcttctaatcaa
gaagacaccgcaatggaagtgaatatgattgctgccgccgaaatagcaagacaattgcgt
cttcgcgatatgggcggaatcatcgtagttgattttatcgatatggcgaatcctgaaaat
cgcaaagtattgttcgacttcttacgagaagaaatgagcgatgataaagccaaacacaaa
atcttaccgccgagtaaatttggattagtccaaattacacgtcaacgagtaagaccagaa
atgaatattaaaactagagaagaagatccaaataatgaaagtggcgaaattgaagcgcca
attctaattattgataaaataactttagatctagaaagagtattaaaaagtcattcaaat
gtggtgcttaatgtacatccatttgtggctgcttaccttaccaaaggttttccatcgata
cgttcaaagtggttctttgaacataaaaaatgggtgaaaatcataccacgtgatgcttac
acgtatttagaatatcatttctttgacaaaaaagggaatggtatttcagaataa
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