Flavobacterium ammonificans: SHINM13_02970
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Entry
SHINM13_02970 CDS
T08737
Symbol
hupA
Name
(GenBank) integration host factor subunit beta
KO
K03530
DNA-binding protein HU-beta
Organism
fao
Flavobacterium ammonificans
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fao03032
]
SHINM13_02970 (hupA)
03036 Chromosome and associated proteins [BR:
fao03036
]
SHINM13_02970 (hupA)
03400 DNA repair and recombination proteins [BR:
fao03400
]
SHINM13_02970 (hupA)
DNA replication proteins [BR:
fao03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
SHINM13_02970 (hupA)
Chromosome and associated proteins [BR:
fao03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
SHINM13_02970 (hupA)
DNA repair and recombination proteins [BR:
fao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
SHINM13_02970 (hupA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
BDB56001
LinkDB
All DBs
Position
complement(348468..348758)
Genome browser
AA seq
96 aa
AA seq
DB search
MTKADIVAKISEKLGLEKGDVQATVETFMNEVKTSLETGDNVYLRGFGSFIVKTRAEKTG
RNISKNTTIKIPAHNIPAFKPAKVFVEGVKINNEAK
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaagcagatatcgtagcgaaaatttcagagaaattaggtctagaaaaaggagat
gttcaagcaactgtagaaacatttatgaatgaagttaaaacttcattagagactggagat
aacgtatatttaagaggttttggaagttttattgtaaaaacaagagctgaaaaaacaggt
agaaacatttctaagaatacaacaattaaaattcctgcacacaatattcctgcttttaaa
ccggcaaaagtttttgtagaaggcgtaaaaatcaataacgaagcaaaataa
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