Flavobacterium ammonificans: SHINM13_05740
Help
Entry
SHINM13_05740 CDS
T08737
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fao
Flavobacterium ammonificans
Pathway
fao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHINM13_05740 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fao03019
]
SHINM13_05740 (rnr)
03016 Transfer RNA biogenesis [BR:
fao03016
]
SHINM13_05740 (rnr)
Enzymes [BR:
fao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SHINM13_05740 (rnr)
Messenger RNA biogenesis [BR:
fao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SHINM13_05740 (rnr)
Transfer RNA biogenesis [BR:
fao03016
]
Prokaryotic type
tRNA degradation factors
SHINM13_05740 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
OB_RNR_1st
S1
OB_HELZ2
HTH_11
Peptidase_C92
S1_2
DUF5604
DUF7430
Motif
Other DBs
NCBI-ProteinID:
BDB56278
LinkDB
All DBs
Position
683681..685861
Genome browser
AA seq
726 aa
AA seq
DB search
MGKRLRKPLKKEKTYSEKIVKILSQSANKVFNYKQIAAKLDLDDTQSRNQIIKDLKILAA
QKTIIESEPGKYLIKAVSQDYYEGKIDMTGRKTAYFVCPDLEEDVFIPTNNLNRALDKDT
VKVYVYNRRKGRRPEGEVIEVIERNKTDFVGVIDIQKNFSFVATANPKMYTDIFIPKDKI
GEAEQGDVVLVHIEDWPKRADSPFGKVIKVLGKPGEHDTEIHAILAEYGLPAEFPIEVET
YAQQIDTSIQASEIAKRRDMRDTLTFTIDPKDAKDFDDALSFKQLENGNYEIGIHIADVS
FYLEEGTILDDEAYQRATSVYLVDRVVPMLPEVLSNFACSLRPQEEKYTFSAVFEINEKA
QVVNQWFGRTVIFSDQRFAYEEAQYIIETKDDTIPQEISITGVPYKVSAAIVDATLKLDE
LAKILRRNRMNEGAISFDKVEVKFNLNQEGEPAGVYFKISKDANHLIEEFMLLANRKVAE
FIGKQKKTFIYRIHDEPNEDKLIAMQTVIAKFGYKIDFRNKGDISKSLNNLLTEVIGTKE
QNLIDTLAIRSMSKAKYSTDNIGHYGLAFDYYSHFTSPIRRYPDVMVHRLLQYYLDGGKS
ADEETYETKCLHSSSMESLATNAERDSIKYMQVKYMQNHQDQEFLGVISGVTEWGIYVEI
IENKCEGMVRIRDIKEDYYTFDEKQYALVGATSHGLLQLGDEIYVKVKNADLVKKQLDFH
FIRRNE
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgggaaagcgtttaagaaaaccgctcaaaaaagagaagacttactctgaaaaaattgta
aaaatactatctcaaagtgctaataaagtattcaattacaaacaaatagcagccaaatta
gatctagacgatacacaaagtagaaatcaaattataaaagatttaaaaattttagctgct
caaaaaacaattatcgaatcagaaccaggaaaatatctaatcaaagcagttagtcaagat
tattacgaaggtaaaattgatatgacaggtcgtaaaacagcttattttgtttgtccggat
ttagaagaagatgtttttataccaactaataatttaaatcgcgctttagataaagacact
gttaaagtctatgtttataaccgaagaaaaggacgtcgaccagaaggtgaagttattgaa
gttattgaacgaaataaaactgattttgttggagttattgatattcaaaagaatttttct
tttgttgctacagcaaatccaaaaatgtacaccgatatttttattccaaaagataaaata
ggagaggcggagcaaggtgatgtagttttagttcatatcgaagattggcctaaaagagcc
gatagtccttttggaaaagtgatcaaagtacttggaaaaccaggcgaacacgatacagaa
attcatgctattttagctgaatatggtttacctgctgaatttcctattgaagtagaaacc
tatgctcaacaaatagatactagtattcaagcttctgaaattgcgaaacgtcgcgatatg
cgtgatactttgacttttactatcgatccaaaagatgcaaaagattttgatgatgcgctg
tctttcaaacaattagagaatggaaattacgaaataggaattcatattgccgatgtttct
ttttatttagaagaaggaactattttagatgatgaagcctatcaaagagccacttcggta
tatttagtggatcgagtagtacctatgttacctgaagtgttgtctaattttgcctgttcc
ttaagacctcaagaagaaaaatatactttctcagcggtatttgaaatcaatgaaaaagca
caagtggtgaaccaatggtttggaagaacagtaattttctctgatcaacgttttgcttac
gaagaagcgcaatatattatcgaaacaaaagatgatacaattccgcaagaaatttctatt
acaggtgtaccctataaagtttcagcagcaattgttgatgctactttaaaactagatgaa
ttagctaaaattttacgcagaaatagaatgaacgaaggtgctatttcatttgataaagta
gaagtaaaattcaacttaaatcaagaaggagaacctgctggagtgtattttaaaatttca
aaagatgcgaatcatttgattgaagaatttatgcttttagcgaatagaaaagtagcggaa
tttattggtaaacaaaagaaaacctttatttatcgtattcacgacgaacctaatgaagat
aaactgattgcaatgcaaactgttattgcgaagtttggttataaaatcgactttagaaac
aaaggtgatatctctaaatcattaaataatttattgaccgaagttattggtactaaagaa
caaaatttaatagatacgttggctattcgtagtatgagtaaagcgaaatactctacggat
aatattggacattacggcttagcttttgattattattcccattttacttcacctattcga
agatatcctgatgtgatggtacatcgtttgttgcagtattatttagatggtggaaaatca
gcggatgaagaaacatacgaaaccaaatgtttacattcttcgtcaatggaaagtttggct
acaaatgcggaacgtgattccatcaaatacatgcaggtaaaatacatgcagaatcaccaa
gatcaagagtttttaggagtgatttcaggagtaactgaatggggtatttatgtcgaaatt
atcgaaaataaatgcgaagggatggttcgaattagagatattaaagaggattattatact
tttgacgaaaaacaatatgcattagttggcgccacttctcacggtttattacagctagga
gatgagatttatgtaaaagtaaaaaacgccgatttagttaaaaaacaattggattttcac
tttataagaagaaacgaataa
DBGET
integrated database retrieval system
