Flavobacterium ammonificans: SHINM13_06800
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Entry
SHINM13_06800 CDS
T08737
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fao
Flavobacterium ammonificans
Pathway
fao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SHINM13_06800 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fao03400
]
SHINM13_06800 (mfd)
Enzymes [BR:
fao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SHINM13_06800 (mfd)
DNA repair and recombination proteins [BR:
fao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SHINM13_06800 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BDB56384
LinkDB
All DBs
Position
829593..832955
Genome browser
AA seq
1120 aa
AA seq
DB search
MSKTVYSIYDTSPKTEQIVALLAQNNSPKLHLSGLVGSSISFVVRSIFKKSELPFLLILN
DKEEAAYYLNDLEQMIGDQDVLFYPASFRRPYQIEETDNANVLLRAEVLNRINSRKKPAI
IVSYPEALFEKVVTRKELDKNTLKVAVGDQISIDFINEVLFEYEFKRVDFITEPGEFSVR
GGIVDVFSFSNDNPYRIEFFGNEVDSIRTFDIATQLSLEQQKKIAIIPNVENKFFQENRE
SFLDYISEKTVLFIQNTEGFLSQLDKQFAKAEEAFDKLSKDIKHATPEQLFLNQEQFTKR
ALDFSVVELASKAIFKTTKKFEFHIQPQPSFNKQFDLLLNNLNDNHFNGYKNYLFCSNDN
QAKRFHDIFETLDEANSENIRKQYNTVVLPLYQGFIDEENQITCYTDHQIFERYHKFSIK
NGYSKKQNITLKELTSLSVGDYVTHIDHGIGKFGGLQKIQVEGKTQEAIKLVYADNDIVY
VSIHSLHKISRYNGKDGTPPKIYKLGSNAWKVLKQKTKARVKHIAFNLIQLYAKRRLEKG
FQYAPDSYLQNELESSFIYEDTPDQIKSTQDVKADMESDRPMDRLVCGDVGFGKTEVAIR
AAFKAVDNSKQVAVLVPTTILAYQHYRTFSERLKDMPVSIGYLNRFRTAKQKAETLKQLA
EGKLDIVIGTHQLVNKNVVFKDLGLLIVDEEQKFGVNVKDKLKTIAANVDTLTLTATPIP
RTLQFSLMAARDLSVITTPPPNRYPIETNVVGFNEELIRDAISYEIQRNGQVFFINNRIE
NIKEIAGMIQRLVPNARVGIGHGQMEGAKLEELMLAFMNGEFDVLVATTIIESGLDVPNA
NTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFICPPYSAMTDDARKRIQALEQFSELG
SGFNIAMKDLEIRGAGDLLGGEQSGFINEIGFDTYQKIMNEAIEELKENEFKDLYPEQND
IETKEYVKDLQLDTDFELLFPDEYINTVSERLLLYNELAEIKDEASLLNYENKLIDRFGP
LPKQAVSLLSSMKIKWIATRIGIEKLVLKQGKMIGYFVSDQQSDYYQSGRFHHVLQFVQK
QSALCKMKEKQTPNGLRLLLTFDNVKSIRRALELMELMGK
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaacagtctattccatttacgatacttcacctaaaacagaacagattgttgcg
ttgttagcccaaaataacagtccaaaactgcatctttcaggcttggtgggatcttcaatt
tcttttgttgtacgttcgatttttaaaaaatcagaattaccgtttttactcattttaaac
gataaagaagaagcggcctattatttgaatgatttggaacaaatgattggcgaccaagac
gtattgttttaccccgcttcgtttcgccggccatatcaaatagaagaaacagacaacgcg
aatgttttgcttcgcgctgaagttttaaaccgcatcaattctcgaaaaaaaccagccata
attgtcagctatcccgaagcgctttttgaaaaagtagtgactcgaaaggaattggacaaa
aacactttaaaagtggccgtaggcgaccaaatttcgattgattttatcaacgaagtattg
tttgaatacgaatttaaaagagtcgattttataactgaacctggtgaattttccgttcgt
ggcggaattgtcgatgtgttttcgttttcgaacgacaatccctatcgaattgaatttttt
ggcaacgaagtagatagtataagaacttttgatatagctacccaattgtcattggaacaa
caaaagaaaattgcgattatacctaatgtagaaaataaattctttcaggaaaaccgcgag
agttttttggattatatctccgagaaaacggttctttttattcaaaatacggaagggttt
ttaagtcaattggacaaacaatttgctaaggcagaagaagcgtttgacaaactttccaaa
gacatcaaacacgctacacctgagcaattattcctaaatcaagaacaatttacaaaacga
gccttggatttttcggtggtggaattggcttccaaagccatttttaaaaccactaaaaaa
ttcgaatttcatattcagccgcaaccgtcatttaacaagcaatttgatttgttgttgaac
aatttgaacgacaatcatttcaatggatacaagaactatttgttctgttcgaatgacaat
caagccaagcgtttccatgatattttcgaaaccttagacgaggctaattcggagaatatt
cgaaaacaatacaacaccgtagtactgcctttgtaccaaggatttattgacgaggaaaac
caaattacctgctataccgatcatcagatttttgaacggtaccacaaattcagcatcaaa
aatggctattcgaaaaaacagaatattaccttaaaagagctgacttcgctttcggttggg
gattatgttacgcatatcgatcacggaattgggaaatttggcggtttgcaaaaaatccaa
gtggaaggcaaaacccaagaggcgattaaattggtctatgccgataatgatattgtgtat
gtgagtattcactctttacataaaatctcaagatacaatggcaaagacggaacgccgcct
aaaatttataaattaggctcgaatgcttggaaagttttaaagcaaaaaaccaaagctcgc
gtcaaacatattgcgttcaatttgattcagttgtatgccaaaagacgtctggaaaaagga
tttcaatatgcgcccgatagttatttgcaaaacgaattagaaagttcgttcatttacgaa
gatacaccggaccaaatcaaatcaacacaggatgtaaaagccgatatggaaagcgatcgc
ccaatggatcgtttggtttgtggcgatgtaggttttggaaaaacagaggtggcaattcgc
gctgcttttaaggcggtggacaatagtaagcaagtggctgttttggtcccaactactatt
ttggcctaccaacattaccgaactttttcggaacgattgaaagatatgccggtttcgata
ggctatttgaatcgttttagaacggcaaaacagaaagcagaaaccctcaaacaattggcc
gaaggaaaactggatattgtcattggaacccaccaattagtgaataaaaatgtggttttc
aaagaccttggattgctgattgttgacgaagaacaaaaatttggagtgaatgtcaaagac
aaactcaaaacgattgcagctaatgtggataccttgactttaacagctacgccaattccg
agaactttgcaattctcgttgatggctgcccgagatttatcagtaatcaccacgccacca
cccaatcgttatcctattgaaacgaatgtggttgggttcaacgaagagttaattcgcgat
gccatttcgtatgaaattcaacgaaacggacaagtatttttcatcaataaccgaattgaa
aacatcaaggaaattgctggaatgattcagcgattggtgcctaatgcccgagtgggaatt
ggtcacggccaaatggaaggcgcaaaactcgaagaattgatgttggcttttatgaacggt
gaatttgatgttttggtagccaccacgattattgaaagtggattggacgtcccaaatgcc
aacacaatttttatcaataatgccaataatttcggactgtctgatttgcatcaaatgcgc
ggtcgagtagggcgaagtaataaaaaagcgttttgctatttcatttgtccgccgtattcg
gcaatgacggatgatgcccgcaaacgaattcaggctttggaacaatttagcgaattagga
agtggatttaatattgccatgaaagatttggagattcgcggcgcaggtgatttattagga
ggagaacaaagtggtttcatcaatgaaattgggtttgacacctatcaaaaaatcatgaac
gaagccatcgaagaattgaaagaaaacgaattcaaggatttgtatccagaacaaaatgat
atcgaaactaaagaatatgttaaggacctgcaactcgataccgatttcgaattgttgttc
ccagatgaatacatcaacacggtttctgaacgattactgctgtataacgagttagcagaa
attaaagacgaagcgtcacttttgaattatgaaaataagctgattgaccgctttggccct
ttgccaaaacaagctgtttctttactgagcagtatgaaaatcaaatggattgctacccgt
atagggattgaaaaattagtcttaaaacaaggcaaaatgattgggtatttcgtatccgac
caacaatcggattattaccaatccggacgttttcatcacgtactacagtttgtgcaaaag
caaagcgctttgtgtaaaatgaaagaaaaacaaacccctaacggattacgattgttattg
acgtttgacaatgtaaaatcaattcgaagagctttggagttgatggagttgatggggaaa
taa
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