Flavobacterium ammonificans: SHINM13_07480
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Entry
SHINM13_07480 CDS
T08737
Name
(GenBank) cryptochrome/photolyase family protein
KO
K06876
(6-4)DNA photolyase [EC:
4.1.99.13
]
Organism
fao
Flavobacterium ammonificans
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fao03400
]
SHINM13_07480
Enzymes [BR:
fao01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.13 (6-4)DNA photolyase
SHINM13_07480
DNA repair and recombination proteins [BR:
fao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
Direct repair
SHINM13_07480
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DPRP
DDAH_eukar
LvrA_C
Motif
Other DBs
NCBI-ProteinID:
BDB56452
LinkDB
All DBs
Position
911087..912622
Genome browser
AA seq
511 aa
AA seq
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MSKTLRLVLGDQLNSNHSWFKTIDDSVTYVMMEIRTETDYATHHIQKIVGFFSAMQEFAA
EIQSQQHRVIYIRLNDGNNLQSFEKNIKSLIEKEQFTHFEYQFPDEYRLDEQLKNLCQSL
SITSYVCDSEHFMSSRNELGDFFEGKKTFLMESFYHMMRKKHHILMEGDKPLTGKWNYDG
ENRKKLPKDHKPTSPLVFQNDVTKIVSEIQKTDIKSIGNIDAENFVWPINRKQSLELLDF
FVTECLALFGSYQDAMTPNEWSLYHARLSFSMNVKLISPLEVIQRAITEWENRPEAIAYH
QLEGFVRQIIGWREYMRGIYWNKMPEYATMNYFNNENSLPEWFWTGKTKMNCLKDAINQS
LNYAYAHHIQRLMVTGNFALLAEIHPDEVDAWYLGIYIDAIEWVEITNTRGMSQFADGGI
VGTKPYVSSAAYIDKMSHYCGSCFYKKAVKTGDKACPFNSLYWNFYDKNEDKLGKNPRIG
MMYNVWRKMKPDDKVALLEQADYYLKNINNL
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaacgttacgattagttctcggagatcaattgaacagcaatcattcttggttc
aaaaccattgatgattcggtgacttatgtgatgatggaaatccgaacagaaacggattat
gccacgcatcatattcaaaaaatagttgggtttttttcggcgatgcaagaatttgctgcc
gaaatacaatcgcaacaacatcgagtaatttatattcgtttgaatgatggcaataattta
caatcgtttgagaaaaacatcaaatcattaatagagaaagaacagtttacccattttgaa
taccaattcccagacgaataccgattggacgaacagttgaaaaatttatgccagtcgctt
tctattacaagttacgtatgcgattcggagcattttatgagttcaagaaacgaattaggt
gattttttcgaaggtaaaaaaacctttttaatggagagtttttaccatatgatgcgtaaa
aaacaccatattttaatggagggcgacaagcctttgacaggaaaatggaattacgatgga
gaaaatcgaaaaaaattacccaaagatcacaaacccacttcgcctttggttttccaaaat
gatgtaaccaaaatcgtttcagaaattcaaaaaacagatatcaaaagcattggaaacatc
gatgcagaaaattttgtttggcccattaacagaaagcaatcacttgaattactcgatttt
tttgtgacggaatgtttagcactttttgggagttaccaggatgcgatgacgcctaacgaa
tggtcgttgtatcacgcccgactttcgttttctatgaatgtgaaactaatttcacctttg
gaagtgattcagcgagcaattacagaatgggaaaaccgtcctgaagcaattgcctaccat
caattggaaggatttgtgcgccaaattattggctggcgcgagtatatgagaggtatttat
tggaacaaaatgcccgaatatgccacgatgaattatttcaataacgaaaactcacttccg
gaatggttttggacaggaaaaaccaaaatgaattgtttgaaagatgcaatcaatcaatct
ctgaattacgcctatgcacaccacattcagcgcttgatggttacaggtaattttgcactt
ttagcagaaattcatcctgatgaagtggacgcttggtatttgggcatttatatcgatgcg
attgaatgggtagaaattacgaacacgcgcgggatgagtcagtttgcagatggcggcatc
gtaggtacaaaaccctatgtgagttcggcagcatacattgacaaaatgagtcattattgt
ggaagttgcttttataaaaaggctgtaaaaacaggagacaaagcttgtcctttcaatagt
ttgtattggaatttttatgataaaaatgaagacaaattaggtaaaaatccccgaattggt
atgatgtacaatgtatggcgcaaaatgaaacccgatgacaaagttgccttattggaacaa
gccgattattatttgaaaaacatcaataatttatga
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