Flavobacterium ammonificans: SHINM13_08140
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Entry
SHINM13_08140 CDS
T08737
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fao
Flavobacterium ammonificans
Pathway
fao03030
DNA replication
fao03430
Mismatch repair
fao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHINM13_08140 (dnaE)
03430 Mismatch repair
SHINM13_08140 (dnaE)
03440 Homologous recombination
SHINM13_08140 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fao03032
]
SHINM13_08140 (dnaE)
03400 DNA repair and recombination proteins [BR:
fao03400
]
SHINM13_08140 (dnaE)
Enzymes [BR:
fao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SHINM13_08140 (dnaE)
DNA replication proteins [BR:
fao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SHINM13_08140 (dnaE)
DNA repair and recombination proteins [BR:
fao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SHINM13_08140 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
Intimin_C
Glyco_hydro_4
Motif
Other DBs
NCBI-ProteinID:
BDB56518
LinkDB
All DBs
Position
982637..987178
Genome browser
AA seq
1513 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDTNNWPRCIQIAWQLHDDMGKLIEHQDYLVKPEGFNIPY
DAERIHGISTELAEAEGILIAEVLEKFNSSLAKAKFIVGQNLGFDVNIMGCEFHRMGVES
PMASLPVLDTCTEVTASLLKLPGGRGGKFKLPTLTELHSYLFNQPFAEAHNATADVEATT
RCFLELIRREIFTKEELDVPASYFQDFQNRNPRTIELIGLQHINLKEASDRIRQQFGEKQ
APTVSKQTLSDNKKALIDADFVHLHNHTQFSVLQSTISVAALVKAAAKHKMPAVAMTDHA
NLMGAFHFVRDILAHNKSAATKNKEAVEKGEEPTEVPMKPIVGCEFFVCDNHKDKSRKDN
GYQIVLLAKTKKGYHNLAKMSSIAHTEGFYYVPRIDKKVIQEYKEDIIVLSGNLYGEIPN
KVLNLGENQAEEALLWWKNEFQNDFYIEVMRHNQEDENRVNTALIALARKHEVKLVATNN
IFYIDKENANAHDILLCVRDGEKQTTPIGRGRGYRYGLPNQEYYFKSGDEMKQLFNDLPE
AISNIAEIVDKIEIYDLARDVLLPKFEIPSEFLVPEDEADGGKRGENKYLRYLTYEGAKK
RYPEITPEIQERLDFELMTIENSGYPGYFLIVQDFIAEARNMGVSVGPGRGSAAGSVVAY
CLKITNIDPLKYNLLFERFLNPDRVSLPDIDIDFDDEGRSSVMDYVIRKYGSKQVAQIIT
YGKMATKSAIRDTARVLDLPLFEADKIAKLIPGMMPSKWNLARFLNEDDALIKKTVRPEE
YDKIKELIALAGGTDLGGQTIQQAKVLEGNLRNTGIHACGVIITPDDITNFVPVATAKDS
DLYVTQFDNSVVESAGLLKMDFLGLKTLTLIKDTVKLVKYRSGIDLNPDEFPIDDQKTYE
LFQRGETVGIFQYESPGMQKYMKELKPTVFPDLIAMNALYRPGPIAYIPSFIKRKNGEEP
IVYDLDDCEELLKDTYGITVYQEQVMLLSQKLADFSKGDADVLRKAMGKKMIDVLAKMEP
KFIEQAMAKGHAKDKLEKIWNDWKAFAEYAFNKSHSTCYAWIAYQTAYLKANYPAEYMAA
VLSNNMSDIKQVSFFMEECKRMGLQVLGPDVNESFYKFTVNDDYAVRFGMGAIKGVGSGA
VATIVENRKDGKYKSIFDLTKRIDLRAANKKALENLALAGGFDSFEGTTRAQYFHDDGDG
ITFYEKAMRYGAKFQENENSSQVSLFGESSDVQIAEPVVPPCEDWSTMEKLAKEKEVVGI
YISGHPLDDYKFEMKHFCNAKLEALKHLEHYVGKTLSFGGIINNVQHRVAKNGKGWASFF
LEGYDESYEFRIFGEEYLKFRHFLIQNNFTYMRVLVKEGWADKETGKKGEPRLQFTLIQY
LQDVLPSFAKKLVLLLNINDIQTDFIQQLNQLFQENKGDNTVTFEIMELEKITKIVETTS
EISDTEEEIFVEETDGDEVDVPLMEAQKISSTTEVEEINVVTKLSMPSRKLKVKISNELL
FELEKRQINFKLN
NT seq
4542 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaatatttgataccgaaaccacaggtttaccaaagcgttgggacgcacccatt
accgatactaacaactggccacgttgtatacaaattgcttggcagttgcacgatgatatg
ggaaaactcatcgagcatcaagattatttggtcaaaccagaaggctttaatattccctat
gatgcagaacgaattcacggtatttcaacggagttagcggaggcggaaggaattcttata
gctgaagttttagaaaaattcaatagttctttggcgaaagccaagttcattgtaggtcag
aatttaggttttgatgtcaatattatgggatgcgaattccaccgaatgggagtagaatcg
ccaatggcatcgttaccggttttagatacctgtactgaagtaacggcttcccttttaaaa
ttacccggcggtcgtggagggaaattcaaattacctaccctaaccgaattgcacagttat
ctttttaatcagccatttgcagaggcccacaatgccactgccgatgtggaggctacaaca
cgatgttttttagaattaattcgacgcgaaatatttactaaggaagaattagatgtaccc
gcttcgtatttccaagattttcaaaatagaaacccgagaacgattgaactaattggatta
caacacatcaatttaaaagaagcttcagatcgaattcgtcaacagttcggagagaaacaa
gcacctacggtttcgaaacaaacactttcagacaataaaaaagcattaattgatgctgat
tttgtgcaccttcataatcatactcagttctcagttttgcaatctaccataagtgttgct
gcattagtaaaagctgcagctaaacataaaatgcctgctgtggcaatgacagatcacgcc
aatttaatgggagcgtttcattttgttcgcgatattttagcccataataaatcagctgca
accaaaaacaaagaagcggttgaaaaaggagaagaaccaacagaggttcctatgaaaccc
attgtaggctgtgagttttttgtttgcgacaatcataaagacaagtctcgtaaagacaat
ggttaccaaattgttcttttggcaaaaaccaaaaaaggctatcataatttggctaaaatg
tcttcgattgcgcataccgaaggcttttattatgtacctagaattgataaaaaagtaatt
caagagtacaaagaagatattattgttttatcaggtaatctttatggcgaaatcccaaac
aaagttttgaacttgggtgaaaaccaagccgaagaagccttgctttggtggaaaaatgaa
ttccaaaacgatttttatattgaggttatgcgccacaatcaagaagatgaaaatcgggtg
aataccgctttgattgctttggctagaaagcacgaagtgaagctggttgcgaccaacaat
attttttatatcgataaagaaaatgccaatgcccacgatattttattgtgtgtgcgcgat
ggtgaaaaacaaactacaccaataggccgaggtcgtggttaccgttacggtttgcccaat
caagaatattatttcaagtcgggcgatgagatgaaacaacttttcaacgacttgcctgaa
gcgatttccaatattgctgaaattgtagataaaattgaaatttatgatttagcccgtgac
gttttattgccaaaatttgaaattccatcggagtttttagttccagaagatgaggcagac
ggtggaaaacgaggtgaaaataagtatttacgttaccttacttatgaaggagcaaaaaaa
cgataccccgagattactcccgaaatacaagagcgtttggactttgagttgatgacgatt
gaaaattcaggttatccaggttactttttgattgtgcaagatttcattgccgaagccaga
aatatgggcgtgtctgttggtcctggaaggggttcggcagcgggttcagtagtagcctat
tgtttgaaaattaccaatatcgatccactgaaatacaacctgctttttgagcgtttctta
aatccggatcgtgtgtctttacccgatattgatattgattttgatgatgaagggcgaagc
agtgtgatggactatgtgattcgaaaatatggttccaaacaagtagctcagattattacc
tatggtaaaatggcaacgaaatcggctattcgtgatacagcacgtgtattggatttaccc
ttatttgaggccgataaaattgcgaagttaattccaggcatgatgccgtcgaaatggaat
ttggctcgttttttaaacgaagacgatgcgttaatcaagaaaacggttcgtccagaagaa
tacgataaaatcaaagaattaattgccttagctggtggaacagatttaggaggacaaacc
atacaacaagctaaagttttagagggaaatcttcgaaacacaggaattcacgcttgcggt
gtgattattacccctgatgatattacaaattttgtaccggttgcaactgctaaagattcg
gatttgtacgtgactcaattcgataactcggtggtagaaagtgccggtttgttaaagatg
gacttcttggggttgaaaaccctaaccttaataaaagatacggttaaattggtgaaatac
agatctggaattgatttgaatccagatgaatttcctattgatgaccaaaagacatatgag
ctttttcaacgtggtgagacagtagggatttttcaatatgagagtcctggaatgcagaaa
tacatgaaggaattaaaacctacggtttttcctgatttgattgccatgaatgcattatat
cgtccgggaccaattgcgtatattccaagttttattaaacgtaaaaacggagaagagcct
attgtgtatgacttagatgattgcgaagagttattgaaagacacctacggaattacggtt
taccaagagcaggtaatgcttttgtcgcaaaaattagctgatttctcgaaaggcgatgct
gacgttttgcgtaaagcaatggggaaaaagatgattgatgtcttggctaaaatggaaccg
aaattcattgagcaagccatggcaaaaggacacgccaaagacaaattagagaaaatttgg
aatgactggaaggcttttgccgaatatgcgtttaataaatcgcactctacttgttacgct
tggattgcctatcaaaccgcttatttgaaagccaattatcctgccgaatatatggctgcc
gtactttcaaacaatatgagcgatatcaaacaagtgtcgttttttatggaagaatgcaag
cgaatgggattgcaggttttaggtccagacgtgaacgagtcgttttataaatttactgta
aacgatgattatgctgttcgttttggaatgggagcgataaaaggagtagggtcgggtgct
gtagcaactattgtcgagaacagaaaagacggaaaatacaaatcgatttttgatttgact
aaacgtattgatttgcgtgccgcgaataaaaaagcattagagaatctagctttagccgga
ggatttgattcgtttgaaggtacgactcgtgcacaatattttcatgatgatggcgacgga
attactttttatgaaaaagcaatgcgttacggagctaagttccaagaaaacgaaaattca
tcacaagtgagtttgtttggagaaagtagcgatgtgcaaatcgccgagcctgtagtgccg
ccttgtgaggattggagtaccatggaaaaattagccaaggagaaagaagtcgttggaatt
tatatttctggacatcctttagatgattataaatttgagatgaaacacttttgcaatgcc
aaattggaagcgctgaaacatttagagcattatgtagggaaaacgctttcttttggagga
attatcaataacgtccaacacagagtggctaaaaacggtaaaggttgggcttcttttttt
ctggaaggatacgatgaaagctacgagttcagaatctttggagaagagtatttgaaattt
cgtcactttttgattcagaacaactttacttatatgcgtgttttggtaaaagaaggatgg
gctgataaagaaactggtaaaaaaggagaacctcgattacaatttacattaatccaatat
ttacaagatgtcttaccgtcatttgccaaaaaattagttttgttattgaatatcaacgat
attcaaactgatttcatccagcaattgaaccaactttttcaagagaacaaaggagataac
actgttacttttgaaataatggaattggaaaaaatcacaaaaattgtagaaaccacttct
gaaatttcggatactgaagaagaaatttttgtagaagaaaccgatggcgatgaggtagat
gttccattaatggaagcacaaaaaatcagctcaactactgaagtggaagaaatcaatgtg
gtaactaaattaagtatgccaagtcgaaaattaaaagtcaaaatatccaatgaattgctt
tttgaattggaaaaaagacaaattaattttaaattgaattag
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integrated database retrieval system
