Flavobacterium ammonificans: SHINM13_10310
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Entry
SHINM13_10310 CDS
T08737
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
fao
Flavobacterium ammonificans
Pathway
fao03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SHINM13_10310 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fao03021
]
SHINM13_10310 (rpoA)
03400 DNA repair and recombination proteins [BR:
fao03400
]
SHINM13_10310 (rpoA)
Enzymes [BR:
fao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SHINM13_10310 (rpoA)
Transcription machinery [BR:
fao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SHINM13_10310 (rpoA)
DNA repair and recombination proteins [BR:
fao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SHINM13_10310 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
Fungal_KA1
Motif
Other DBs
NCBI-ProteinID:
BDB56735
LinkDB
All DBs
Position
1229367..1230359
Genome browser
AA seq
330 aa
AA seq
DB search
MAIFNFQKPDKVIMIDSTDFEGKFEFRPLEPGYGLTVGNALRRVLLSALEGYAITSVRIE
GVDHEFSTISGVVEDVTEIILNLKQVRFKRQIEDIDNESVTISVSGKEQLTAGDFQKFIS
GFQVLNPELVICNIDSKVKLNFDLTIEKGRGYVPAEENKKQNAAIGTIFTDSIFTPVKNV
KYAIENFRVEQKTDYEKLVFEIKTDGSINPKDALTEAAKVLIHHFMLFSDERITLEADEI
AQTESYDEESLHMRQLLKTKLVDMDLSVRALNCLKAAEVDTLGDLVSFNKNDLMKFRNFG
KKSLTELDELVAVKNLTFGMDLAKYKLDKE
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcaatatttaattttcagaagcccgataaagttatcatgatcgattcaaccgatttt
gaaggtaaatttgaatttagacctttagaacctggttacggattgactgttggtaatgca
cttagaagagttttgctttcagcattggaaggttatgcaatcacatcggttcgcatcgaa
ggtgtagatcatgagttttctactatttcaggagttgttgaagacgttaccgaaattatc
cttaatcttaaacaagtacgtttcaaacgtcaaattgaagatatcgataatgaatctgtt
actatttcagtttctggtaaagagcaattaacagctggtgattttcaaaaatttatttca
ggttttcaagttctgaatccagaacttgtaatttgtaacattgatagtaaagtcaaactg
aatttcgatttaacaattgaaaaaggtagaggatatgttcctgctgaagagaacaaaaaa
caaaatgctgcaattggaaccatttttacagattcaatttttactccggtaaaaaatgta
aaatatgctattgaaaacttccgtgtagagcaaaaaacagattatgaaaaattagttttt
gaaattaaaactgatggttctattaatcctaaagatgcacttactgaagcggctaaagtt
ttaattcaccatttcatgttgttctcagacgaaagaatcactcttgaggctgacgaaata
gcacaaacagaatcatacgatgaggaatcattacacatgagacaattgcttaaaactaag
cttgttgatatggatctttctgttagagcattaaactgcttgaaagcggctgaagttgat
acacttggtgatttagtatcgttcaataaaaatgacctaatgaaattccgtaatttcggt
aagaaatcgttaactgaacttgatgagttagtagcggttaaaaacttgaccttcggaatg
gacttggcaaaatacaaactagataaagaataa
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