Flavobacterium ammonificans: SHINM13_10930
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Entry
SHINM13_10930 CDS
T08737
Symbol
recQ1
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fao
Flavobacterium ammonificans
Pathway
fao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHINM13_10930 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fao03019
]
SHINM13_10930 (recQ1)
03400 DNA repair and recombination proteins [BR:
fao03400
]
SHINM13_10930 (recQ1)
Enzymes [BR:
fao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SHINM13_10930 (recQ1)
Messenger RNA biogenesis [BR:
fao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SHINM13_10930 (recQ1)
DNA repair and recombination proteins [BR:
fao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SHINM13_10930 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
HRDC
RQC
RecQ_Zn_bind
ResIII
HTH_40
HHH
Motif
Other DBs
NCBI-ProteinID:
BDB56797
LinkDB
All DBs
Position
1294110..1296305
Genome browser
AA seq
731 aa
AA seq
DB search
MNSNEIDIHKELKKYFGFGQFKGLQEPVIKSILNKENTFVIMPTGGGKSLCYQLPALIQE
GTAIVVSPLIALMKNQVDAIRSLSSENGIAHVLNSSLTKTEITQVKNDITAGITKLLYVA
PESLTKDEYVQFLQSVKVSFVAIDEAHCISEWGHDFRPEYRNLRYIIKQLGDVPIIGLTA
TATPKVQEDILKNLDMSDATTYKASFNRPNLYYEVRTKTKNIESDIIRFIKQNKGKSGII
YCLSRKKVEAIAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVEVVVATIAFGMGID
KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAEQE
IGFALLQEVVAYAETSMSRRKFLLHYFGEEFDSETGEGADMDDNVRNPKNKVEAKNQVVK
LLEVVRDTKHLYKSKEVVFTLIGRVNAVIKAHKTDSQSFFGCGVDHDEKYWMALLRQVLV
DGYLAKDIETYGIVKITDKGLDFIKNPISFMMSEDHEYNETEDDAIVSAASSSGTADEAL
MAMLRELRKKEAKNLGVPPFVVFQDPSLEDMALKYPISLDELTNIHGVGEGKAKKYGAPF
LALISRYVEDNDIIRPDDLVVKSTGVNSANKLYIIQNIDRKLSLDDIASAKGMTMDDLIK
EMEQIVYSGTKLNIKYWIDDMLDDDQQEEIHEYFMESDSDKIEDALKEFDGEYDIDELRL
MRIKFISEVAN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaattcaaacgaaattgatatccataaagaattaaagaagtattttggcttcggacaa
ttcaagggactgcaagaaccagtaattaaaagtattttgaataaagaaaatacttttgtt
attatgcccacgggaggcggtaaatcactttgttaccaattacctgctttgattcaagaa
gggacagccattgtggtgtctccattaattgctttaatgaagaatcaggtagatgctatt
cggagtttatcttctgaaaatggaattgctcacgtattaaattcttcattaactaaaaca
gaaattactcaggttaaaaatgatattacagcgggtattacaaaattattgtatgtcgct
ccagaatcccttaccaaagacgaatacgttcaatttcttcaatcggttaaagtctctttt
gtagctattgacgaagcgcattgtatatccgaatggggtcatgattttagaccggaatac
cgtaatttacgttatataataaaacagttaggtgatgtgcctattattgggttgaccgct
acggcgactccaaaagtgcaggaagacatattgaaaaatttagatatgtccgatgcgact
acctataaagcgtctttcaacagaccgaatttgtattacgaagttcgtacaaagactaag
aatattgaatcggatattattcgttttatcaaacagaataaaggaaaatcaggaattatt
tattgcttaagccgtaaaaaagtagaagcgattgccgaggtgttgcaagtgaatggcatt
agtgcagttccgtatcatgctggattggatgccaaaacacgtgccaaacatcaagacatg
ttcttgatggaagatgtggaagtagtcgtagcaactattgctttcggtatgggaattgac
aaaccggatgtacgttttgtaattcaccacgatattccaaaatctttagaaagttattac
caagaaactggtcgtgctggtcgcgatgggggcgaaggtcattgtttagcctactattcc
tacaaagatgtagagaaattagaaaagtttatgtcgggtaaacccgttgcagaacaagaa
attggatttgctttattgcaagaagttgtggcctatgctgaaacttctatgtccagacgt
aaatttttattgcattatttcggagaagaatttgatagcgaaacaggagaaggtgccgac
atggatgacaatgttcgcaatccgaaaaataaagtagaagctaaaaatcaagtagtgaaa
ttacttgaagtggtaagagatacgaaacatttatacaagtctaaagaagtagtgtttact
ttgattggccgagtaaatgctgtgattaaagcgcacaaaacagattcacaatcctttttt
ggttgtggtgttgatcatgatgaaaaatactggatggcgctgttaagacaagttttggtt
gatggctatttggcgaaagatattgaaacctatggtatcgtaaaaattacggataaaggc
ttggattttatcaaaaacccgatttcgtttatgatgtctgaggatcacgaatacaatgaa
actgaagacgatgctattgtaagcgctgccagttcttctggaactgccgatgaggctttg
atggcaatgttacgggagttgcgtaaaaaagaagcgaaaaatctaggggtacctcctttt
gtagttttccaagatccatctctagaagatatggctttgaaatatccaatctcacttgat
gaattaacaaacattcacggtgttggagaagggaaggcaaaaaaatatggcgcgccattt
ttagcactaattagccgttatgtagaggacaatgatatcatccgaccagatgatttagta
gtcaaatctacgggtgtgaattcggccaataaattgtacatcattcaaaatattgatcgt
aaactttcactagatgatattgcttccgcaaaaggaatgacaatggatgatttgataaaa
gagatggaacagattgtttattctggaaccaaattgaacatcaaatattggattgacgac
atgttagatgacgatcagcaagaagaaatccatgagtattttatggaatcggattcggat
aaaatagaagatgcactgaaagaatttgatggagaatacgatattgatgaactgcgtttg
atgcgtattaaattcattagcgaagtggctaattaa
DBGET
integrated database retrieval system
