Flavobacterium ammonificans: SHINM13_11840
Help
Entry
SHINM13_11840 CDS
T08737
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
fao
Flavobacterium ammonificans
Pathway
fao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SHINM13_11840 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fao03019
]
SHINM13_11840 (rny)
Messenger RNA biogenesis [BR:
fao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SHINM13_11840 (rny)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH-I_KHDC4-BBP
HTH_37
Motif
Other DBs
NCBI-ProteinID:
BDB56888
LinkDB
All DBs
Position
complement(1380888..1382453)
Genome browser
AA seq
521 aa
AA seq
DB search
MDNIVTIIITGIVGVVAGFAIAKILEKSNISNLIKTAKKEAASIIKDANFEAENIKKDKI
LQAKEKFIELKSEHEQVILARDKKVAEVEKRVRDKESLISNELAKAKRVNDDYEAKTLEY
TSKLEILEKKQAEVERMHKSQLQQLEVISGLSAEDAKEQLIEGLKAEAKTQAMSQIQDTI
EEAKLTAQQEAKKIIINTIQRVGTEEAVENCVSVFNIESDDVKGRIIGREGRNIRALEAA
TGVEIIVDDTPEAIILSCFDPVRREIARLSLHKLVTDGRIHPARIEEVVAKTAKQIDDEI
IEVGKRTVIDLGIHGLHPELIKVVGRMKYRSSYGQNLLQHSREVSKLCGIMAAELGLNVK
LAKRAGLLHDIGKVPDAESDLPHALLGMQWAEKYGEKEEVCNAIGAHHDEIEMKSLLSPI
IQVCDAISGARPGARRQVLDSYIQRLKDLEEVAYGFGGVKSAYAIQAGRELRVIVESEKV
SDDKASNLSFEISQKIQTEMTYPGQVKVTVIRETRAVNIAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggacaacatagtaacaatcattattaccggaatagtaggagtagtagctggttttgca
attgcaaaaatcttagaaaaaagcaacatttcgaacctaataaagacagcgaaaaaagaa
gcagcatctattatcaaagacgctaattttgaagcagaaaacatcaaaaaagataaaatt
cttcaagctaaagaaaagtttatcgaattgaaatctgaacacgaacaagtaattttagct
cgtgataaaaaagtagctgaagtagaaaaaagagttcgcgataaagaatctctaatttca
aatgaattggctaaagccaaaagagtaaacgacgactacgaagctaaaacacttgagtat
acttctaaattggaaatcttagaaaagaagcaagccgaagtagaaagaatgcataaaagt
cagctgcaacagttagaagtgatttctggattatcagcagaagacgcaaaagagcaatta
attgaaggtttaaaagctgaagctaagacgcaagcgatgtctcaaattcaagatactatt
gaagaggcgaaattaactgcacagcaagaagcgaagaaaataatcatcaataccatccaa
cgtgtaggtacagaagaagcagttgaaaattgcgtttctgttttcaacattgaatcagat
gatgtaaaaggtagaattattggacgtgaaggacgtaacattagagcgttagaagccgct
accggagtggaaattatagtagatgatactcctgaagcaattatcctttcttgttttgat
ccagtacgtagagaaattgcccgtttgtcattacataaattagtaactgacggacgaatt
caccctgcgcgtatcgaagaagttgttgctaaaactgcaaaacaaatcgatgacgaaatc
attgaagtaggtaaacgtacggtaattgatttaggtatccacggattacaccctgaattg
attaaagtggtaggtagaatgaaataccgttcatcttacggacaaaacttattgcaacac
tcacgtgaagtatctaagctttgtggaattatggctgccgaattaggattgaatgtaaaa
ttggcgaagagagccggtttattacacgatattggtaaagtgccagatgcagaaagtgat
ttaccacacgctttattagggatgcaatgggctgagaaatacggtgagaaagaagaagta
tgtaatgctattggagcgcaccacgacgagattgagatgaaatcattattgtctccaatc
attcaagtgtgtgatgctatttcaggagcaagaccaggagcaagaagacaagtattggat
tcatacattcaacgtttgaaagatcttgaagaagtagcttacggatttggcggagtaaaa
agtgcttacgcgattcaagcaggtagagaattacgtgtaattgtagaaagcgaaaaagtt
tctgatgacaaagcatctaacttatcattcgaaatttcacaaaaaattcaaactgaaatg
acctatccaggtcaagttaaagtaacagtaattagagagactagagcggtaaatatcgct
aaataa
DBGET
integrated database retrieval system
