Flavobacterium ammonificans: SHINM13_12180
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Entry
SHINM13_12180 CDS
T08737
Name
(GenBank) pseudouridine synthase
KO
K06181
23S rRNA pseudouridine2457 synthase [EC:
5.4.99.20
]
Organism
fao
Flavobacterium ammonificans
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fao03009
]
SHINM13_12180
Enzymes [BR:
fao01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.20 23S rRNA pseudouridine2457 synthase
SHINM13_12180
Ribosome biogenesis [BR:
fao03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
SHINM13_12180
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
DUF5818
IrmA
Motif
Other DBs
NCBI-ProteinID:
BDB56922
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All DBs
Position
1418094..1418672
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AA seq
192 aa
AA seq
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MSHQHFIIHKPYGYLSQFVYELKRKKRLLGELYPFPEGTMAIGRLDEDSEGLLLLTTDGM
MSEIVRSKKVEKEYYVQVDGVIHQEAVEQLQKGVEIGFNGKKYITKPCKAFLIHEVPAFG
YRGKKIRDERHGPTSWVSITINEGKFRQVRKMTACVGFPTLRLVRVRVGNVRLNDLQAGE
VIEVADFQIENK
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcatcagcattttattattcataaaccctacggctatttgagtcagtttgtgtat
gaattaaaaagaaagaaacgacttttgggagagttatacccatttccagaaggcacaatg
gctatcggtcgtttggatgaagattcggaaggtttattattgttgactacggacggtatg
atgagcgaaattgttcgtagcaaaaaagtggaaaaagaatactatgtgcaagtagatggt
gtaattcatcaagaagcggtggaacaattgcaaaaaggtgttgaaataggatttaacggt
aaaaaatacatcactaaaccctgcaaagcctttttaattcatgaagttcctgcttttggc
tatagaggaaaaaaaattcgagatgaacgtcacggacctacttcttgggtttccattacg
attaatgaagggaagttcagacaggttcgtaaaatgacagcttgtgtaggttttcctact
ttgcgtttagtacgtgttcgtgtgggaaatgtacgtttgaatgacttacaggcaggcgaa
gttattgaagtagctgattttcaaatagaaaataaataa
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