Flavobacterium ammonificans: SHINM13_13830
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Entry
SHINM13_13830 CDS
T08737
Name
(GenBank) exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
fao
Flavobacterium ammonificans
Pathway
fao03030
DNA replication
fao03430
Mismatch repair
fao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHINM13_13830
03430 Mismatch repair
SHINM13_13830
03440 Homologous recombination
SHINM13_13830
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fao03032
]
SHINM13_13830
03400 DNA repair and recombination proteins [BR:
fao03400
]
SHINM13_13830
Enzymes [BR:
fao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SHINM13_13830
DNA replication proteins [BR:
fao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SHINM13_13830
DNA repair and recombination proteins [BR:
fao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SHINM13_13830
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
GIY_YIG_2
DEDDh_C
RNase_H_2
DNA_pol_A_exo1
T5orf172
DUF7508
Motif
Other DBs
NCBI-ProteinID:
BDB57087
LinkDB
All DBs
Position
complement(1602123..1603484)
Genome browser
AA seq
453 aa
AA seq
DB search
MYAILDIETTGGQFNEEGITEIAIYKFDGHKVVDQFISLVNPEIPIQPFVVKLTGINNAM
LRSAPKFFEVAKRIIEITSDCVIVAHNASFDYRILRTEFKRLGFDFQAKTLCTVELSKKL
IPEQPSYSLGKLVRALGIPMADRHRASGDAMATTKLFKMLLEKDVEKQILNDFIKQEIQK
GIAPKLLDIVENLPSKTGVYYIHNEKGDLIYIGKSRNIKKRINQHFTGTSTKSKKIQREV
FTVTYEETGSELIALLKESEEIKINKPIFNRAQRKSIFEWALYSEKDTNGYLNLRLQKAD
GRKKEITSFTTLQEGKNALFRITEKYRLCQKLTGLYQTNSDCFQYKIKECDGACIGKVTP
EEYNNRVQKFIAENSFENQNKILIDRGRNVNERSAVLIENGIYKGYAFYDLNYQVTHIDI
LKNILIPMQHNRDAKTIIQGQIRRSKTLKTISF
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
ttgtacgcaattctcgacatagaaaccaccggaggtcaattcaacgaagaaggaattacc
gaaatcgccatctacaaatttgatggtcacaaagtggtggatcaattcatcagtttagtg
aatcctgaaattccaattcagccttttgtggttaaattgacagggattaataatgccatg
ttgcgctcagcacccaagttttttgaagtggctaaacgcattattgaaatcacttcggat
tgtgttattgtcgcacacaatgcttcatttgattaccgaattttacgcaccgaattcaaa
cgtttaggcttcgattttcaagccaaaaccttatgtaccgtagaattgtctaaaaaatta
attcccgaacaaccttcgtatagtttaggaaaattagttcgcgctttaggcattccaatg
gcagaccgacaccgagctagcggagacgctatggcaacaaccaaattattcaaaatgctt
ttggaaaaagatgtcgaaaagcaaattttgaacgactttatcaaacaagaaatccaaaaa
ggaattgcaccaaaactgttggatattgtagaaaatttaccttctaaaacaggtgtttac
tacattcataacgaaaaaggcgatttgatttacattggcaaaagccgaaatatcaaaaag
cgaattaatcaacactttacgggaacttctaccaaatccaaaaagattcaaagagaagta
tttacggttacttacgaagaaacgggcagcgaattgattgcccttttgaaagaaagcgaa
gaaatcaaaatcaacaaacctattttcaatcgagcgcaacgcaaaagtatctttgagtgg
gctttgtattccgaaaaagacacaaacggctatttgaatttacgcttgcagaaagccgat
ggacgcaaaaaagaaatcacctcttttacaacactccaagaaggcaaaaatgcgcttttc
cgtattaccgaaaagtaccgattgtgtcaaaaactgactggtttatatcaaaccaattca
gactgctttcaatataaaatcaaagaatgtgacggcgcttgtattggaaaagttaccccg
gaagaatacaacaaccgagtacaaaaattcatcgccgaaaatagttttgaaaaccaaaat
aaaattttgatagatcgtggtcgcaatgttaatgagcgctctgcggttttgatagaaaac
ggaatttacaaaggctatgctttttatgatttgaattaccaagtaacccatattgatatt
cttaaaaatattttgattccgatgcaacacaatcgtgatgcaaaaacaattatccaagga
caaattagaagaagtaaaacactaaaaacaatttcgttttaa
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