Flavobacterium ammonificans: SHINM13_16460
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Entry
SHINM13_16460 CDS
T08737
Symbol
uvrD
Name
(GenBank) DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
fao
Flavobacterium ammonificans
Pathway
fao03420
Nucleotide excision repair
fao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SHINM13_16460 (uvrD)
03430 Mismatch repair
SHINM13_16460 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fao03400
]
SHINM13_16460 (uvrD)
Enzymes [BR:
fao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SHINM13_16460 (uvrD)
DNA repair and recombination proteins [BR:
fao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SHINM13_16460 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
SHINM13_16460 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
ResIII
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
BDB57350
LinkDB
All DBs
Position
1898249..1900585
Genome browser
AA seq
778 aa
AA seq
DB search
MQHYIDQLNEAQREPVLQKDGPMIIIAGAGSGKTRVLTIRIAYLMSQGVDAFNILSLTFT
NKAAREMKNRIASIVGASEAKNLWMGTFHSVFARILRSEAEHLGYPSNFTIYDSQDSVRL
ISSIIKEMQLDRDIYKPKQVLSRISTYKNSLITVKAYFNNPELQEADAMSKKPRLGEIYQ
NYVERCFKAGAMDFDDLLLKTNELLTRFPEILAKYQNRFRYILVDEYQDTNHSQYLIVRA
LSDKFQNICVVGDDAQSIYAFRGANINNILNFQKDYDNVRTFRLEQNYRSTRNIVEAANT
IIDKNKTKLDKIVWTANDFGPKIKVHRSLTDAEEGRFVASTIFEQKMQNQMLNGQFAILY
RTNAQSRAMEDALRKRDIPYRIYGGLSFYQRKEIKDVLCYLRLIINPKDEEALIRVINYP
ARGIGDTTVEKLTIAANHYKRSIFEVMQNIDKIDLKLNSGTKQKLTDFVNMIKSFQIINE
NQDAFYITDHVAKKTGLVQELKKDATPEGMAKIQNIEELLNGIKDFTEGQKEIDGARGAL
SEFMEDVALATDLDKDTSDEDRVALMTIHLAKGLEFPHVFVVGMEEDLFPSAMSMSTRSE
LEEERRLFYVALTRAEHQAYLTYAQSRYRWGKLTDSEPSRFIEEIDGQYLEYLTAAESNY
RYKPMIDSDIFGDVDKSKLRLAKPVSGTPPKYITDNQPKPDSPIRRLKPVTGNAPNSGNA
NLFDNKLVVGNIVMHERFGKGEVINMEGVGADRKAEIRFEVGGIKKLLLRFAKLEIIG
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atgcagcactatattgatcaattaaacgaagcgcaacgtgaacccgtacttcaaaaagac
ggtccaatgattatcattgcgggtgcaggttctggtaaaacccgtgtgttgacgattcga
attgcctatttgatgagtcaaggcgtagatgcgtttaatattttgtctttgacctttacc
aacaaagctgcgcgcgaaatgaaaaatcgtattgcgtctattgtgggagccagtgaggct
aaaaatctttggatgggaacgtttcactcggtgtttgcgcgtattttgcggtctgaagca
gagcatttgggttacccctctaattttacgatttacgattcacaagactcagtgcgtttg
atttcttcgattattaaggaaatgcaattggatcgcgatatttacaaacccaaacaggtg
ttgagccgaatttccacctataaaaatagtttaattaccgtaaaggcctatttcaataat
cccgaattacaagaagccgatgcgatgtctaagaaaccgcgtttgggcgagatttaccaa
aattatgtggagcgttgttttaaagcaggcgccatggattttgatgatttattattaaaa
acgaatgagttactcactcgtttcccagaaatattagccaaataccaaaaccgttttcgc
tatattttagtggatgagtaccaagatacgaatcattctcagtatttgattgttcgcgcc
ttatcggataaattccaaaacatttgtgtggtgggagatgatgcgcaaagtatttacgca
ttccgtggtgccaacattaataacatcttgaatttccaaaaggattatgataatgtaaga
acctttcgtttggaacaaaattaccgttcgacacgtaatatagtggaagcggcgaatacc
attattgataagaataaaaccaaactggataagattgtttggacagccaatgattttgga
ccaaaaataaaagtacaccgcagtttgaccgatgcggaagaaggacgttttgtagcgagt
acaatttttgaacaaaagatgcaaaaccaaatgttaaatggtcaatttgctattttgtat
cgtaccaatgcgcaatcgcgtgctatggaagatgccttgcgtaaacgtgatattccatat
cgaatttatggcggactctctttttatcaaagaaaagaaatcaaagatgttttgtgctat
ttgcgtttgataataaatccaaaggatgaagaagccttgattcgtgtgattaattatcct
gccagaggaataggggataccactgtcgaaaagttgactattgcagccaatcattacaag
cgctcgatttttgaagtgatgcaaaacattgacaaaatcgacttgaaactgaattcggga
accaaacaaaagctaaccgattttgtcaatatgatcaagagttttcaaattatcaatgaa
aaccaagatgctttttacattaccgatcatgtagccaaaaaaacaggtttagtacaagaa
ttgaagaaagatgctacaccagaagggatggctaaaatccaaaacattgaggaattactc
aatggtatcaaggattttaccgaaggccaaaaagaaattgatggtgcacgtggagcctta
tccgaatttatggaagatgtggctttggctaccgatttagataaagacaccagcgatgaa
gaccgcgtagctttgatgacgattcacttggccaaaggattggaatttccacacgttttt
gtggtaggaatggaagaagatttgtttccaagcgcgatgagtatgagtacccgttcagag
ttggaagaagaacgtcgtttattctatgtggcgttaactcgtgccgaacatcaagcgtat
ttaacctatgcgcaatcacgttatcgttggggaaaactaacggatagtgaaccttctcgt
tttattgaagaaattgacggacagtatttagaatatttaacagctgccgaatctaattac
cgctacaaaccgatgattgatagtgatatttttggcgatgttgacaaatccaaattgcgt
ctagcaaaacccgtttcaggaacgccacctaaatacattaccgataatcaacctaaacca
gacagtcctattagacgtttgaaaccagtaactggaaatgctcccaattctggcaatgct
aatttattcgataataaattagtagttggaaatattgtaatgcacgagcgttttggcaaa
ggcgaagtgatcaatatggaaggtgttggagccgacagaaaagcggaaattcgttttgaa
gtgggaggaattaagaaactcttgttgcgttttgcaaagttggaaataataggatag
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