Falsirhodobacter algicola: GR316_06745
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Entry
GR316_06745 CDS
T07373
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fap
Falsirhodobacter algicola
Pathway
fap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GR316_06745 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fap03019
]
GR316_06745 (rnr)
03016 Transfer RNA biogenesis [BR:
fap03016
]
GR316_06745 (rnr)
Enzymes [BR:
fap01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GR316_06745 (rnr)
Messenger RNA biogenesis [BR:
fap03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GR316_06745 (rnr)
Transfer RNA biogenesis [BR:
fap03016
]
Prokaryotic type
tRNA degradation factors
GR316_06745 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
Motif
Other DBs
NCBI-ProteinID:
QUS35987
UniProt:
A0A8J8MSQ2
LinkDB
All DBs
Position
complement(1327400..1329619)
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AA seq
739 aa
AA seq
DB search
MDQLPSKDQILQWIADHPTQSAKRDIAKAFGIKGSALRIELKRLLKEMEAEGQLAKKKHS
YHDASVLPPVSILRIEGPDDAGDLFAAPLEWEGAGDPPRILMRAAPSDALGAGDKVLARL
SAVEGEDYAYDARLIRKIGSNPLRVLGIFRATSEGGRIVPIDKGQDKEWIVGRNDTADAR
DGELVEAESTSKRMGLPRARIVARLGDPSAPRAISLIAIHQHGIPDHFPDPVIAEAEAAR
PAPEDGREDLRDLALVTIDPPDARDHDDAVFAEAAPDGGHIVWVAIADVAHYVTPGSQLD
REARRRGNSTYFPDRVVPMLPDVLSGDLCSLHEGVDRPCLAVRMHLAADGSMVGHRFVRG
IMRSAASLTYAEVQAAQDGAPSERTAPLMGPVIAPLYAAYEAAKAARERRQPLDLELPER
RIELTEEGTVASVAFRDRLDAHKLIEEFMILANVAAAEELIRLRRPLLFRVHEEPSAEKL
ETLREVAEASGFTLAKGQVLRTSHLNRLLAQARGGDYDELMNITTLRSMTQAYYYPENLG
HFGLSLRNYAHFTSPIRRYSDLIVHRALISGHGWGEDGLSPFDIENLSDTAKQISDTERR
SMMAERDTNDRYLAAWLSDRVGAEFSGRVSGVQRFGLFVKLDESGADGLIPIRSLGHEFF
HFDGDAQVLIGADSGLTLGIGQRVLVRLTEAVPVTGGLMLELLELEGDALPRKTQRRGKG
GPRKPAKLERKRRVIRSRR
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atggaccagttgccttccaaagaccagatcctgcaatggatcgccgatcatccgacgcag
tcggccaagcgggatatcgccaaggccttcggcatcaagggcagtgcgctgcgcatcgag
ttgaagcgcctgctgaaggagatggaggcggaggggcagctggcgaagaagaagcacagc
tatcacgacgcctcggtgctgccgccggtgtcgatcctgcggatcgaggggccggacgat
gcgggcgatctgttcgccgcccccctcgaatgggagggcgcgggcgatccgccccgcatc
ctgatgcgcgcggccccctccgatgcgcttggcgcgggcgacaaggtgctggcacgcctg
tccgccgtggagggcgaggattacgcctatgacgcgcgcctgatccgcaagatcggctcc
aatccgttgcgggtgctggggatcttccgcgccacctccgaaggggggcggatcgtgccc
atcgacaaggggcaggacaaggaatggatcgtcgggcgcaacgacaccgccgatgcccgc
gatggcgagttggtggaggccgaaagcacgtccaagcgcatgggcctgccgcgcgcccgc
atcgtggcgcgtctgggcgatccttcggcgccgcgggcgatctcgctcatcgcgatccat
cagcacggcatccccgaccatttccccgatcccgtcatcgccgaggccgaggccgcgcgc
ccggcccccgaggatgggcgcgaggatctgcgcgatctggccctcgtcacgatcgacccg
cccgatgcgcgcgatcatgacgatgcggtctttgccgaagccgcgcccgatggcggacat
atcgtctgggtcgcgatcgccgatgtcgcccattacgtcacccccggcagccagctggac
cgcgaggcgcggcggcgtggcaactccacctatttccccgaccgcgtggtgccgatgttg
cccgatgtgctgtcgggcgatctctgctcgttgcacgaaggcgtggaccggccctgcctt
gcggtgcggatgcatctggcggccgatggcagcatggtcggccaccgtttcgtgcgcggg
atcatgcggtccgccgccagcctgacctatgccgaggtgcaggccgcgcaggacggcgcc
ccgtccgaacggacggcgccgctgatggggccggtcatcgcgccgctctatgccgcctac
gaggccgcgaaggccgcgcgcgaacgccgccagccgctcgatctggaactgcccgaacgg
cggatcgaactgaccgaggaggggaccgtcgcctccgtcgcgttccgcgatcggctggac
gcgcataagctgatcgaggagttcatgatcctcgccaatgtcgccgccgccgaggagttg
atccgtctgcgccgcccgcttctgttccgcgtccacgaggagccgagcgccgagaagctg
gaaacgctgcgcgaggtggccgaggcatcgggcttcacgctggccaaggggcaggttctg
cgcaccagccacctgaaccgtctgctcgcacaggcgcggggcggcgactatgacgagctg
atgaacatcacgaccctgcggtcgatgacgcaggcctattactatcccgaaaatctgggc
catttcggcctgtccttgcgcaattacgcgcatttcacctcgccgatccgccgctattcg
gacctgatcgtgcaccgggcgctgatctccggccatggctggggggaggacgggctgtcg
cccttcgacatcgagaatctgtccgatacggccaagcagatttccgacaccgaacgccgg
tcgatgatggcggagcgggacaccaacgaccgctatctcgcggcatggctgtcggaccgg
gtgggggcggaattctcgggccgggtatccggggtgcagcgcttcggtctgttcgtgaag
ctggacgaatcgggtgcggacgggctgatcccgatccgcagcctcgggcacgaattcttc
catttcgacggcgatgcgcaggttctgatcggggccgatagcgggctgacgctggggatc
gggcagcgcgtcctcgtccggctgacggaggcggtgcccgtcacgggcgggctgatgctg
gaactgctggaactggagggcgacgccctgccgcgcaagacgcagcgccgcggcaaaggc
ggtccgcgcaaacccgccaagctggaacgcaaacgccgcgtcatccggtcacgccggtag
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