Rhodobacteraceae bacterium SC52: G5B39_02955
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Entry
G5B39_02955 CDS
T06457
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
faq
Rhodobacteraceae bacterium SC52
Pathway
faq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
faq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G5B39_02955 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
faq03021
]
G5B39_02955 (rho)
03019 Messenger RNA biogenesis [BR:
faq03019
]
G5B39_02955 (rho)
Transcription machinery [BR:
faq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
G5B39_02955 (rho)
Messenger RNA biogenesis [BR:
faq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
G5B39_02955 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_22
OB_RNB
AAA
AAA_25
Fungal_virus_P2_C
Mor
NACHT
Motif
Other DBs
NCBI-ProteinID:
QIE42806
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All DBs
Position
604432..605703
Genome browser
AA seq
423 aa
AA seq
DB search
MSQERLNLSDLKAKSPKDLLAMAEELDIENASTMRKGEMMFQILRERADEGWEISGDGVL
EVLQDGFGFLRSPEANYLPGPDDIYVSPDMIRQFSMRTGDTIEGVIQSPRDTERYFCLTR
VSKINFEDPERARHKINFDNLTPLYPDERLKLEIEDPTIKDKTARVIDLVAPIGKGQRSL
IVAPPRTGKTVILQNIAASIERNHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEP
ASRHVGVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTTVPSSGKVLTGGVDANALQ
RPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSELVLDRKIADKRVY
PAIDIMKSGTRKEDLLIDKMNLQKTFILRRILNPMGTTDAIEFLLTKLKQTKSNSEFFDS
MNT
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
gtgtcccaagaacgtctcaacctgtctgacctgaaggcaaaaagccccaaggatctgctg
gcgatggcagaggaactcgacatcgaaaacgcctcgaccatgcgtaagggcgagatgatg
ttccagatcctgcgcgagcgggctgacgaaggttgggaaatctcgggtgacggtgttctt
gaggttcttcaagacgggttcgggtttttgcgctcgcccgaggcgaactatcttcccggc
ccagacgacatttatgtgtctcccgacatgatacgtcagttttccatgcgcacgggggat
acgatagaaggggtcattcaatcgccccgcgatacggaacggtatttttgcctgacgcgc
gtatcgaagatcaatttcgaagatccagaacgcgcccggcacaagatcaactttgataac
ctgacgccgctttatccggatgaaaggctcaagcttgaaatcgaagatccgaccatcaag
gacaagactgcgcgcgtgatcgatctggtggcaccaatcgggaagggtcagcgatcattg
atcgtcgcaccgccgcgcactggtaagacagttattcttcagaatattgccgcctcgatc
gagcggaaccacccggagtgctatctgatcgtgctgctgattgacgaacgtcccgaagag
gtgacggacatgcagcgctcggtgaagggggaggttgtcagctcgaccttcgatgaaccc
gcctcgcgtcacgtgggcgtttccgagatggttatcgagaaggcaaagcgcctggttgag
cataagcgtgacgtggtcatccttctggacagtatcacgcgtcttgggcgggcctacaac
accactgttccaagttctggtaaggtcctgacaggcggcgtcgatgcgaatgccctgcag
cgccccaaacgcttctttggcgcggcgcggaatatcgaagaaggcggctcgctgacgatt
atcgcgacggcgcttatcgataccggcagccgtatggatgaagtcatctttgaagaattc
aaaggtacaggtaactctgaactggtgcttgatcgcaagattgccgacaaacgcgtgtac
ccggctatcgacataatgaaatcgggtactcgtaaggaagacctgttgatcgacaagatg
aacctgcaaaagacgttcattctgcgtcgcatcctgaatccgatgggcacaaccgatgcg
atcgaattcttgttgactaagttgaagcaaacaaagtcaaattctgaattcttcgactcc
atgaatacctga
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