Rhodobacteraceae bacterium SC52: G5B39_03135
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Entry
G5B39_03135 CDS
T06457
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
faq
Rhodobacteraceae bacterium SC52
Brite
KEGG Orthology (KO) [BR:
faq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
faq03016
]
G5B39_03135
Enzymes [BR:
faq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
G5B39_03135
Transfer RNA biogenesis [BR:
faq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
G5B39_03135
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QIE41042
UniProt:
A0A6G6F3Z2
LinkDB
All DBs
Position
complement(642063..642674)
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AA seq
203 aa
AA seq
DB search
MTNHLHKGDLPDSLDLGPIVAIDCETMGLNPHRDRLCVVQLSAGDGDAHLVQIAKGQSSA
PNLCRLLRDPSVLKLFHFGRFDIAAMYKAFGALATPVYCTKIASKLVRTYTDRHGLRNLV
QELLSQDISKHQQSSDWGAKELTQAQIDYAASDVLHLHALRVELNRRLEREGRMKIAQSC
YDFLPTRARLDLEGWPDMDIFSH
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaatcatctgcacaaaggcgaccttcccgactcgctggaccttggaccaattgtg
gccatcgactgcgaaacgatgggtctgaacccccaccgtgacaggctgtgtgttgtacag
ctttccgccggggatggtgatgcgcatctcgtccaaatcgccaaaggtcaaagctcggcc
ccgaacctgtgtcggctgctgcgcgatccgtcggtattgaagctctttcacttcggtcgg
ttcgacatcgcggcgatgtacaaggcgtttggcgccctggccacgcccgtctattgcacg
aaaatcgccagcaagctcgttcgaacctataccgaccggcatggattgcggaaccttgtt
caggagttgctgtcgcaggatatttcaaagcaccagcagtcaagcgattggggggcaaaa
gagcttacgcaagcacagattgactacgcggcatcagatgttcttcaccttcacgcgctt
cgcgtcgaactgaaccgccgactggaacgtgaaggacgcatgaagattgcacaatcatgc
tacgactttcttcccacccgcgcccgccttgatcttgaaggttggcccgatatggacatt
ttcagccattga
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