Rhodobacteraceae bacterium SC52: G5B39_04700
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Entry
G5B39_04700 CDS
T06457
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
faq
Rhodobacteraceae bacterium SC52
Pathway
faq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
faq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G5B39_04700 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
faq03021
]
G5B39_04700 (rpoC)
03400 DNA repair and recombination proteins [BR:
faq03400
]
G5B39_04700 (rpoC)
Enzymes [BR:
faq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G5B39_04700 (rpoC)
Transcription machinery [BR:
faq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G5B39_04700 (rpoC)
DNA repair and recombination proteins [BR:
faq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G5B39_04700 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
BSH_YknX
RPOC_hybrid
DUF7567
Motif
Other DBs
NCBI-ProteinID:
QIE41315
LinkDB
All DBs
Position
955305..959561
Genome browser
AA seq
1418 aa
AA seq
DB search
MNQELTNNPFNPLTPPKAFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFC
ARIFGPIKDYECLCGKYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLK
SLPSRIGLMLDMTLRDLERILYFENYVVIEPGLTDLTYGQLMTEEEFMDAQDAYGMDAFT
AGIGAEAIRDMLSQIDLDSEALRLRDELKEATGELKPKKIIKRLKVVESFLESGNRPEWM
VLTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKR
MLQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVT
GPELKLHQCGLPKKMALELFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIR
EHPVMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQ
LEARVLMMSTNNVLSPANGAPIIVPSQDMVLGLYYVTLMRQGMKGEGMIFADEDEVQHAL
DAGEVHLHAKITARIKQIDETGQEVYRRYETTPGRIRLGNLLPLNAKAPFDLVNRLLRKG
EVQQVIDTVYRYCGQKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDGKWPIVNGVKD
QVKEFEQQYMDGLITQGEKYNKVIDAWSKCSDQVADAMMADISAVRVEDGVEQEPNSVYM
MAHSKARGSPAQMKQLGGMRGLMAKPDGSIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVRAHDCGTDKAITAEAAVNDGEVVSTLGERVLGRVS
ADDVLRPTTDEVIVAAGELIDERKADLIESAGVQKMRIRSPLTCEAEEGVCANCYGRDLA
RGTLVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGGIAQGGQQSFQEAGNEGTIEFRNAST
LENSFGEKIAVGRNMQIAIVGPEGEDLASFKIGYGTKIFVTNGQKIARGTKLFEWDPYTL
PIIAEKAGQARFVDLVSGIAVRDVTDDATGMTQKIVTDWRSAPKGNDLKPEIIVMDPETG
EPVRNEAGNPVSYPMSVDAILSIEEGQDISVGDVVARIPREGAKTKDITGGLPRVAELFE
ARRPKDHAIIAELDGHVRFGKDYKNKRRISIVPTDETLEPAEYMVPKGKHIPVAEGDFVQ
KGDYIMDGNPAPHDILRIMGIEALADYLIDEVQDVYRLQGVKINDKHIEVIVRQMLQKYE
VLDSGETTLLKGEHVDKFELDEVNEKALKDNRRPAHAEPILLGITKASLQTRSFISAASF
QETTRVLTEASVQGKRDKLIGLKENVIVGRLIPAGTGGASSKVRRIASERDQKVIATKQA
EAEAALALQAPDEPVVSDVFGSGQSESTFVNTPENRDE
NT seq
4257 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaacttaccaacaacccgttcaacccgctgaccccgccgaaagccttcgac
gagatcaaagtatctctggccagcccagagcgtatcctcagctggtccttcggtgagatc
aaaaagcccgaaacgatcaactatcgcacattcaagcccgagcgtgatggcttgttctgc
gcacgtatctttggcccgatcaaagattacgaatgcctgtgcggcaaatacaagcgcatg
aaatatcgcggcgttgtctgtgaaaaatgcggcgttgaagtgacgttgcaaaaggtccgc
cgcgagcggatgggccacatcgaactggcgtcgcccgttgcacatatctggttcctcaag
tcgttgccgtcgcgcatcggcctgatgctggatatgacgcttcgtgatctggagcggatt
ctctatttcgagaattacgttgtgatcgagcccggcctgacagatctgacctatggtcag
ttgatgaccgaagaagagttcatggatgcgcaggacgcgtatggcatggacgccttcaca
gcgggcatcggtgctgaagcgatccgggatatgctatcccagatcgaccttgattccgaa
gcgctgcgtttgcgcgatgagttgaaagaagccacgggcgaattgaagcccaagaagatc
atcaagcgccttaaggttgtcgaaagcttccttgaatccggcaaccgcccggaatggatg
gttttgacggtcgttccggtgattccgcccgaactgcgcccgctggtgccgctggatggc
ggccgctttgcgacgtctgacttgaacgatctgtatcgccgggtcatcaaccgcaacaac
cgtctgaagcgtctgatcgagttgcgcgcgcccgacatcatcatccgtaacgaaaagcgg
atgctgcaggaatccgtggatgcgctgtttgacaacggtcgtcgcggccgggtcatcacc
ggggccaacaagcgcccgctgaagtctctgtcggatatgctcaagggtaagcagggtcga
ttccgccagaaccttttggggaagcgcgtcgacttttcgggtcgttcggtcattgtgaca
ggcccggagttgaagctccatcagtgcggtttgcccaagaagatggccctcgagctattc
aagccgttcatttactcgcggcttgaggcaaaagggctgtcctcgacagtcaagcaggcg
aagaagctggtcgaaaaggaacgtcctgaggtttgggacatccttgacgaggttatccgc
gaacacccagtcatgctgaaccgggcgccaacactgcaccgtcttggtattcaggcgttt
gaacccacgctgatcgaaggcaaggcaatccagcttcacccgctggtctgttcggctttc
aacgccgactttgacggtgatcagatggctgtacacgtccccctgagccttgaggcccag
ttggaagcgcgcgttctgatgatgtcgacaaacaacgttctgtcgcccgcaaacggcgcg
ccgatcatcgttccatcgcaggatatggttcttggcctctactacgtgaccctgatgcgt
cagggcatgaagggcgagggcatgattttcgcggatgaggacgaggtgcagcacgcgctt
gatgcaggtgaagtgcacctgcatgccaagattactgcgcggatcaagcagatcgacgag
acgggccaggaagtctatcgccggtacgaaaccacaccgggccggatccgtttgggcaac
ttgttgccgctcaacgccaaggctccgtttgatcttgtgaaccgtctgctccgcaagggc
gaagttcagcaagtgattgacaccgtctaccgctattgcggccagaaagagtcggtcatc
ttctgtgaccagatcatgacgatggggttcagagaagcattcaaggcgggtatcagcttc
ggcaaggatgacatggtcatcccggacggcaagtggccgattgtgaatggcgtaaaagac
caagtcaaagaattcgaacagcagtacatggacggcctgattactcagggcgaaaagtac
aacaaagtcatcgatgcgtggtcgaaatgttccgaccaggtcgccgatgcgatgatggct
gatatttcggctgttcgggtcgaagatggggtcgagcaggaaccgaactcggtttacatg
atggcccactccaaggcccgtggttcgcctgcgcagatgaagcagcttggcgggatgcgc
ggtctgatggccaagcccgacgggtcgatcatcgaaacgccgatcatttcgaactttaaa
gaaggtttgaccgttctcgagtacttcaactcgactcacggtgctcgtaagggcctcgcg
gatacggctttgaaaacggcgaactcgggttatctgacccgtcgtctggttgacgtcgcg
caggattgtatcgtgcgggctcatgactgcggaacggacaaggcgatcacagccgaagcc
gccgtgaatgatggcgaagtcgtatcgaccttgggcgagcgggttctgggccgggtttct
gcggatgatgtactgcgcccgaccacggatgaagtgatcgttgcagcaggcgagttgatc
gacgaacggaaggctgatctgatcgagagcgcgggcgtgcagaagatgcgcatccgtagc
ccgttgacctgtgaagccgaagagggcgtctgcgccaactgttatggtcgtgaccttgcg
cgcggtactttggtgaaccaaggcgaagcggtgggtatcatcgcggcgcagtccattggt
gaaccgggcacacagctgacgatgcgtactttccacatcggcggtattgctcagggtggt
cagcagtccttccaagaggcgggcaatgaagggacgatcgagttccgcaatgcctccaca
ttggaaaactcgttcggtgagaagatcgccgttggccggaacatgcagattgcgattgtt
ggtccggaaggcgaggatctggccagcttcaagatcggttatggtaccaagattttcgtg
accaacggtcagaagatcgcacgcggcaccaagctgttcgaatgggatccgtacaccctg
ccgatcattgccgaaaaggctggtcaggcgcggtttgtggaccttgtttcgggtattgcg
gtccgtgacgtgaccgatgatgcgacaggcatgacacagaagatcgtgaccgactggcgt
tctgcgccgaaaggcaacgatctgaaacccgagatcatcgtgatggacccggaaaccggg
gaacccgttcgcaacgaggcgggcaatccggtcagctatccgatgtccgtggatgcgatt
ttgtcgatcgaagaaggtcaggacatcagcgtcggtgacgttgttgcgcgtattccgcgt
gaaggcgccaaaaccaaggacattaccggtggtctgccgcgtgttgcggaactgttcgaa
gctcgtcgtcccaaggatcacgcgatcatcgccgagttggatggtcacgtgcgcttcggg
aaagactacaagaacaagcgccgcatctcgatcgtgccgacggatgaaacgcttgagcct
gccgagtacatggtgcccaagggcaagcacatcccggttgccgagggcgatttcgtccaa
aaaggcgactacatcatggatgggaaccctgcgccgcacgacattttgcggatcatgggg
atcgaagcgcttgctgactatctgatcgacgaagtgcaggacgtctatcgtctgcagggc
gtgaagatcaacgacaagcacatcgaggtcatcgtgcgccagatgcttcagaaatacgaa
gttctggacagcggtgagacaacgcttctcaagggcgaacatgtcgacaagttcgagttg
gacgaagtgaacgaaaaggcgctgaaggacaatcgtcgtccagcgcatgcagagccgatc
ctgcttgggattaccaaggcttcgttgcagacccggtcgtttatctcggcggcttcgttc
caggaaacaacgcgcgtgctgaccgaagcttcggttcagggcaagcgggacaagttgatt
ggtctgaaggaaaacgtcatcgttggtcggcttatcccggccgggactggtggggcgagc
agcaaggtgcgccgtatcgcttctgagcgtgaccagaaggtcatcgcgaccaagcaggcg
gaagcagaggcggccctcgctttgcaggctcctgacgagcctgtggtctcggacgtgttt
ggcagcggtcagtccgaaagcacgtttgtgaacacgccggaaaaccgcgacgagtaa
DBGET
integrated database retrieval system
