Rhodobacteraceae bacterium SC52: G5B39_09935
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Entry
G5B39_09935 CDS
T06457
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
faq
Rhodobacteraceae bacterium SC52
Brite
KEGG Orthology (KO) [BR:
faq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
faq03016
]
G5B39_09935 (rnd)
Enzymes [BR:
faq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
G5B39_09935 (rnd)
Transfer RNA biogenesis [BR:
faq03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
G5B39_09935 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
QIE42920
UniProt:
A0A858CP21
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All DBs
Position
complement(2032825..2033982)
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AA seq
385 aa
AA seq
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MITLTTTEELADYCTRARQHPYVTIDTEFLRERTYYSQLCLIQLAMPGDSDNDAVLVDPL
AGELSLEPLYDLFRDTSVVKVFHAARQDLEIFYFDGKCFPTPLFDTQVAAMVCGFGEQVG
YETLVKRIVNEPLDKSSRFTDWSRRPLSDAQKTYALADVTHLRTIYESLAANLDKQGRRK
WVEEEIQVLTRPETYVIQPNEAWKRVKTRTNSARFMAVVAKLAEFREGYAQARNVPRSRV
YKDDALVELASAKPTNIGDLGKLRLLLREARKGDIAEGILKAVAAGLEMPAEDAPRPDRS
REKLMVNPALADLLRVLLKTKSERAGVAQKLIASAADLDLIAAGERDVAALSGWRGEVFG
RDALRLCNGEIALAAKGNDVAIIQL
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
attattaccctgacgacgaccgaagagcttgccgactactgtacgcgcgctcggcagcac
ccttatgtcaccatcgacacggagtttttgcgcgaacgcacctattattcgcagctttgt
ctcatccaattggcgatgccgggcgattctgacaatgacgctgtgctggttgatccattg
gccggagagctgtcgcttgaaccgctttacgaccttttccgtgacacatctgtggtgaaa
gtttttcatgccgcacggcaggatctggaaattttctacttcgatggaaagtgtttcccg
acacctttgttcgacacgcaagtggctgcaatggtatgcggctttggcgagcaggtcggt
tatgagacactggtgaaacgcatcgtgaacgaaccgctcgacaagtcttcgcgctttacc
gactggagccgcaggccgctttctgatgcgcaaaaaacctatgccttggcggatgttaca
catctgcgcactatttatgaatctctcgcggccaatttggacaagcagggtcgccgtaaa
tgggttgaggaagagatacaggttctcacccggccagaaacctatgtgatccagcccaat
gaggcgtggaagcgcgtaaagacccgcacaaattcggcccgcttcatggctgttgtggcg
aagctggcggaatttcgcgaaggctatgcccaggcccgtaacgtgccacgcagccgtgtg
tacaaagacgacgcattggtcgaattggcgtctgcaaagccgaccaatataggtgatcta
ggcaagttgcggcttcttctgcgcgaggctcggaaaggcgacatcgccgaagggatcttg
aaggcagtcgcagccggtcttgaaatgcccgccgaagatgcgccgcgcccggaccgaagc
cgcgaaaagttgatggtgaacccggcactggccgatttgctgcgcgtgttgttgaagacg
aaatctgaacgtgcgggcgttgcccaaaagctgatcgcaagtgcggctgatctggatctg
atcgcagcaggcgaacgggatgttgcggcgctgtcagggtggcgcggcgaggtttttggg
cgagatgctcttcgtttgtgcaatggtgaaattgctctggctgccaagggcaatgatgtg
gcgatcattcaactttga
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