Fopius arisanus: 105270435
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Entry
105270435 CDS
T07645
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
fas
Fopius arisanus
Pathway
fas03013
Nucleocytoplasmic transport
fas03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
fas00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105270435
03015 mRNA surveillance pathway
105270435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fas03019
]
105270435
Enzymes [BR:
fas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105270435
5.6.2.5 RNA 5'-3' helicase
105270435
Messenger RNA biogenesis [BR:
fas03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105270435
mRNA cycle factors
Common to processing body (P body) and stress granule
105270435
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
UvrD-helicase
DEAD
NAT10_TcmA_helicase
NPHP3_N
ATPase
SRP54
nSTAND3
AAA_22
AAA_16
nSTAND_NTPase5
AAA_10
AAA_7
AAA
AAA_32
AAA_5
Motif
Other DBs
NCBI-GeneID:
105270435
NCBI-ProteinID:
XP_011309658
UniProt:
A0A0C9RWD7
LinkDB
All DBs
Position
Unknown
AA seq
1116 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDHGQSQQSQ
PIQINGTNGSSALDLKISGAAQNLAELQFEEEEEEAFYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETILECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGEIHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECTCNFVVDFIWKSTSFDRMQLALRKFAVDDSS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSADEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLVKID
FPWPVPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLINSANPGSHFMSTSMYDAREALIPGSVYDRSGGQMNGNQSHNPYYQRNVPLDMFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRNPGGMK
GKGPRVGKLSQNDQNTQPFSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVGD
FQSQMDGLLSQDSTYQGDRSGFYQGQSQPGQFSQPY
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgatgcgtatggacccagcagccagaccctgacattcctggacaccgaggag
gctgatctcattggtgctgacacacagggaagtgaatttgactttactgactttacgttg
ccatcaccgagtcagacacaggcgtcacagcatgatcatgggcagagccagcaaagtcag
ccgatccagatcaatggaacaaacggaagttcagctctcgatctcaagatttctggtgca
gctcagaacctggcagagctgcagttcgaggaggaagaggaagaggcattctacaatcgt
gacttgccagagcacgcgtgcaagtactgcgggattcacgaggcctcgtgcgttgttatg
tgcaacgtctgcaggaagtggttctgcaatggtagaggcaacacctcgggatcacacatt
attaatcacctggtgagagccaagcacaaggaagtaactctacacagggatggacccctg
ggtgaaaccattctggaatgctactcttgcgctgtcaggaacgtcttcgtccttggattt
attcctgccaaagctgattcggtcgttgtattgttgtgcagacaaccttgtgctgcgcag
agttcactgaaggacatgaattgggatcaagagcaatggaagcccctgatcgaggaccgt
agtttccttgcgtggctggtgaaaattccctcggagcaggagcagctccgagcgcgtcaa
atctcagctcagcagataaataaacttgaggagctgtggcgtgacaacgtggacgcgaca
ttccaggatctggagaaacctggagtggacgaggagccccagcaagtactcctgcgttac
gaggatggctatcagtaccaaaatattttcggtcctctggtgaagctcgaggcggactac
gacaaacgcctgaaggaatcccagactcaggagaacatcgaggtccgttgggacgtcggt
cttaacaagaagacaatcgcttacttcatgctggcgaagacagacggtgatatgaagctc
atgcacggtgatgagttgaggctccgctatctgggagaaatccacaagccctggtcaggg
ataggacacgtcataaagatcccagataactacggtgaagaggttggcatcgaattgaag
aacaattcaggtgctccaaccgagtgtacctgcaatttcgtggtggattttatctggaaa
agcacgagcttcgatagaatgcagcttgcacttcgaaaattcgccgtggatgactcatct
gtatctgcgtacatctatcatcgtctgctggggcacgaggtggaggaggtgctctttcgt
tgtcacttgccgaagcatttcagtgcccccaacctgccagatctcaatcgctcgcaggtt
tatgccgtcaagcatgctgtacaacgtcccctgtctttgatccaggggcccccgggtaca
ggaaagacagtgacgagcgcaacgatcgtttatcaactggtaaaacagaatggaggacca
gtcctggtgtgtgctccatcgaacaccgcagtcgaccaactcactgaaaaaattcacaag
tccaatctcaaagtggttcgcctctgtgctaaatccagggaagctatcgactccccagtc
tccttcctcgctcttcacaatcagataaaaaatatggagaccaacactgagctgcagaag
ctccagcagctcaaggatgagactggagagttatcatcagctgatgagaaacgttacaga
ttactgaagaaagctgctgagaaggagctcttggaggctgctgatgttatctgctgtaca
tgtgtgggagctggggatcctcgcctccacagactaaagttccattcgattctcatcgat
gagagcatgcaggcaactgagcctgagtgcatggtaccagtggtactgggggctaaacag
ctgattctcgttggagatcattgtcaactggggcctgttgtgatgtgcaagaaagcagca
cgagctggactgtctcagtctctcttcgaacgactcgttgtcctggggataagacctttc
agactcgaggttcagtacagaatgcatccagatttatcgagattcccctcgaatttcttc
tacgagggttcactccagaatggtgtttgcgcagacgagagaaaactcgtgaagattgac
tttccctggccagtgccagacaaaccaatgttcttttatgtgactcaaggacaggaggag
atagcaggaagtggtacttcgtacctgaacagaaccgaagcatcgaacgtggagaaaatc
accacgagatttcttcgttgtggagttaaacctgagcagattggtgttatcactccctac
gagggacaacgagcctatctcgtacagtacatgcagtatcagggctccctgcactcaaag
ctctaccaagagatcgaagtagcaagtgttgacgccttccaaggacgcgaaaaggacata
atcatcatgtcgtgtgtcagatcgaacgaacaccagggcattggtttcctgaatgatccc
aggaggctgaacgtcgccctgactcgagccaaatacggtatcataatcgttggcaatcca
aaggtcctatccaagcaaccactgtggaaccacctcctgagtttctacaaggagcagaaa
gtgctagtggaggggcccctgaacaatctcaaagaatcgatgattcagtttgcaaagccc
aagaaattaatcaactcggccaatccaggctctcacttcatgtcgacctcgatgtacgat
gccagggaggccctgataccaggatcagtgtatgatagatctggcggccagatgaatggc
aatcagagccacaatccttactaccagaggaatgtacccctcgacatgttcagtagaact
cacgacacaataagctacataagccctgaacgggctcaggcagccatgaataatgttcca
gtgcctgtggggatgttcatgaatatggctcatgtgccaccccggttttacaatcagcat
caacaggcactgcaggcaagacagaaccagaggaatcgtcgtaatcctgggggaatgaag
ggaaaaggacccagagttggtaaattgagtcagaacgatcagaacactcagcccttcagt
caaccaggactaccactgactcaaggaactactcagggaatgtcacagcctggattcagt
ctgtcccagcctggtctcagtcaggctgaactctcccaggactcgtttgccgttggtgat
ttccagtcgcagatggatggactcctctcgcaggattccacttaccagggggacaggagt
ggattttatcagggacagtcccagcctggacaattctcgcagccgtattga
DBGET
integrated database retrieval system
