Flavobacterium arcticum: DVK85_00720
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Entry
DVK85_00720 CDS
T05621
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fat
Flavobacterium arcticum
Pathway
fat03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fat00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DVK85_00720 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fat03021
]
DVK85_00720 (rpoC)
03400 DNA repair and recombination proteins [BR:
fat03400
]
DVK85_00720 (rpoC)
Enzymes [BR:
fat01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DVK85_00720 (rpoC)
Transcription machinery [BR:
fat03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DVK85_00720 (rpoC)
DNA repair and recombination proteins [BR:
fat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DVK85_00720 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AXG72833
UniProt:
A0A345H8C3
LinkDB
All DBs
Position
complement(163476..167777)
Genome browser
AA seq
1433 aa
AA seq
DB search
MTRLKDKNTVKRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDFECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKI
GYILGLPSKKLDMIIYYERYVVIQTGIAKNVDGESLNKMDFLTEEEYLNILDTLPQENQY
LDDTDPNKFIAKMGAECIMDLLARIDLDELSYNLRHSANTETSKQRKTEALKRLQVVESF
RESNKNRENRPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLM
EIKAPEVILRNEKRMLQESVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPEMKLFECGIPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
KEPVVWDILENVIKGHPILLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYMTKERLSTEEV
KIKGEGLTFYSAEEVNIAINEEKLHLNARIKIRAKDFNEEGELVYKIIQTTAGRVLFNEV
VPEAAGFINEVLTKKSLRDIIGKILNVTDVPTTAAFLDSMKDMGYKFAFRGGLSFSLGDI
IIPPRKQELIADANGQVDAISVNYNMGLITNNERYNQVIDVWTSTNAMLTELAMKNIRED
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLHDVSQDVIVNSVDCGTLRGIEVSPLKKNE
EIVETLGERILGRVALQDVINPLTSEVIIHAGEQITEAGVKAVNAAPIERVEVRSPLTCE
ATKGICAKCYGRNLATGKMTQRGEAVGVIAAQSIGEPGTQLTLRTFHVGGTAGNISEESS
ITTKFKGKLEIEDLKTVVGEDSDGNKVDIVVSRSTELKLVDENTGILLNTHNIPYGSSIY
VKDGEVVEQGAVICKWDPYNGVIISEFTGKIAYEDIEQGQSFMVEIDEQTGFQEKVISES
RAKKLIPTLLIYGKDGELIRSYNLPVGAHLMVDNGEKIKAGKVLVKIPRRSSKAGDITGG
LPRITELLEARNPSNPAVVSEIDGVVSFGKIKRGNREIIIESKFGEIKKYLVKLSNQILV
QENDYVKAGLPLSDGAITPEDILRIQGPSAVQQYLVNEIQEVYRLQGVKINDKHFEVVIR
QMMRKVRVQDPGDTLFLEDQLIHTRDFIVENDKLYGMKVVEDAGDSENLKAGQIISPREL
RDENSLLKRTDKNQVVARDVITATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKIDTLQGLKENVIVGHRIPAGTGMRDYDSIIVGSKEDVNDLLTPTTEEVNY
NT seq
4302 nt
NT seq
+upstream
nt +downstream
nt
atgacgagattaaaagataaaaataccgttaaaagattcaataagatatctataggcctt
gcatcgccagagtctatacttgctgagtcaagaggtgaggttcttaaacctgaaaccatt
aactatcgtacacataaaccagaaagagatggcttattttgtgagcgtatttttggtcca
gtaaaagattttgagtgtgcctgtggtaagtacaaacgaatccgatataaaggaattgtt
tgtgaccgatgcggtgtagaagttacagagaagaaagttcgacgtgacagagtagggcat
attaaccttgttgtgcctattgcacatatatggtatttccgttcgttacctaacaaaata
ggttatatacttggtcttccttctaagaaattagatatgattatatactatgaaaggtat
gtagttatacagacaggtattgccaaaaatgttgatggcgaatcgcttaataaaatggat
ttccttacagaagaagaatatctaaatatattagatacccttcctcaagaaaatcaatat
ttagacgatacagacccgaataaattcatcgctaagatgggtgcggaatgtattatggac
ttgttggcaagaatagatcttgatgaactatcttacaacctgcgccatagtgctaataca
gaaacgtctaaacaacgtaaaacagaagcacttaagagactacaagttgtagaatctttc
cgtgagtctaataaaaacagggagaaccgccctgagtggatgatacttaaggtaatacca
gttattccaccagagcttcgcccattagtgccacttgatggtggtcgttttgcaacatca
gaccttaacgacctttatagaagagttattatacgtaataaccgtctaaaaaggcttatg
gagataaaagcaccagaagttatccttcgtaatgagaagcgtatgctacaggaatctgta
gattcactttttgataatactaggaaagcatctgctgttaaaaccgaatctaacagacca
ctaaaatcattatcagattcattaaaaggtaaacaaggacgtttccgtcaaaaccttcta
ggtaaacgtgttgactattctgcacgttcggtaattgttgttgggccagaaatgaaactt
tttgaatgtggtattcctaaagatatggctgctgagctgtacaaaccattcgttatccgt
aaattgatagagcgtggtattgttaaaacagtaaaatcagctaaaaaaattatagataaa
aaagagcctgtagtatgggatatccttgaaaatgtaattaaaggacaccctatattactt
aaccgtgctcctacgcttcaccgtttgggtatccaagcatttcagccaaaacttattgaa
ggtaaagcaatacagcttcacccattagtatgtacggcatttaatgcggattttgatggt
gaccagatggcggtacaccttcctttagggccagaggctatactagaggcacaattatta
atgcttgcttcgcacaatatccttaaccctgctaatggtgcacctattacagtaccatct
caggatatggtactgggtctatattatatgaccaaagaacgtttatctacagaagaggtt
aagattaaaggtgaaggtttaacattctactctgccgaagaggtgaatattgccattaac
gaagaaaaactacacctgaatgctcgtataaaaatacgtgctaaagattttaatgaagaa
ggtgaacttgtttataaaattatacaaactacagcaggtagagtactctttaacgaggtt
gtaccagaagctgcaggatttataaatgaagtattgactaaaaagtcattaagagatatt
attggtaagatattaaatgttaccgatgttcctactactgcggcattccttgatagtatg
aaggatatggggtataaatttgcattccgaggtggactatctttcagtcttggagatatt
attattccgccaagaaagcaagaacttattgccgatgcaaatgggcaagtagacgctatc
tctgtaaactataatatgggtcttattaccaataacgaacgttataaccaagttattgat
gtatggacttctactaatgcaatgcttactgagctagcaatgaaaaacattcgtgaagac
caacaagggtttaactcggtgtttatgatgcttgactctggagctaggggtagtaaagaa
caaattcgtcagcttacaggtatgcgtggtttgatggctaagcctaaaaaatcgactgcc
ggtggtggtgaaattattgaaaacccgattctttcgaactttaaagaaggactttcgatt
cttgagtactttatttctactcacggtgctcgtaaaggtcttgcggatacggctcttaaa
acggcagatgctggttacttaacaagaaggctgcatgacgtttctcaagatgttattgtg
aactctgtagattgtggtacattaagaggaattgaagtttctccattaaagaaaaacgaa
gagatagtagaaacacttggcgaaagaatattgggtcgtgtagcattgcaagatgttatt
aatccattaacgtcagaagtgattatacacgcaggtgaacaaataaccgaagctggtgta
aaagccgtaaatgctgctcctatcgaaagagtagaagtacgttctccgttaacttgtgag
gctactaaaggtatttgtgctaagtgttacggacgtaaccttgcaactggtaaaatgacc
caaagaggtgaagctgttggtgtaatcgcagcacaatctattggtgaaccaggtacacag
cttacacttcgtactttccacgttgggggtactgcaggtaacatttctgaagaatcaagt
atcactaccaaatttaaaggtaaacttgaaattgaagatcttaaaactgttgtgggcgaa
gacagcgatggtaataaagtagatatcgtggtatcacgttctaccgagttgaaattggtt
gacgaaaacacaggaatattattaaatacacacaatataccatacggttctagtatttat
gtaaaagatggcgaagttgtagaacaaggcgctgtaatatgtaagtgggacccttataat
ggtgtaattatatctgagtttacaggtaagattgcttatgaagatatcgagcaaggacaa
tcgttcatggttgagattgatgagcaaactggattccaagaaaaagtaatttcagaatca
agagctaagaaattaatacctacattattaatctacggaaaagatggcgagcttattcgt
tcgtataatcttcctgtaggtgctcaccttatggtagataatggagagaaaattaaggct
ggtaaagtacttgttaagataccaagacgttcatctaaagcaggtgatattactggaggt
ctaccaagaattacagagcttctagaagcacgtaatccttctaaccctgctgtagtatca
gagattgatggagtggtttcatttggtaaaatcaaaaggggtaaccgtgagattattatc
gaatcgaaatttggcgaaatcaagaaatatcttgtaaaactatctaaccagatattggta
caagagaatgactatgtgaaagctggtttaccactttctgatggtgctattactccagaa
gatatattaagaatacaaggaccatctgcagtacagcagtatcttgtaaacgaaattcag
gaagtgtatagactgcaaggtgtgaagattaatgataagcactttgaagtagttattcgt
caaatgatgcgtaaagtgcgtgttcaagatccaggagatactcttttcctagaagatcaa
ctaatacacactagagactttatcgtagagaacgataagctttacggaatgaaagtagta
gaagatgcaggtgactctgaaaaccttaaagcagggcaaattatttcgccacgtgagtta
agagatgagaattcattactaaaacgtactgataaaaaccaagtagtagcaagagatgta
attacagctacagctacgccaatacttcagggtattacaagagcatcgctacaaactaag
tcgtttatctctgctgcatcgttccaggaaactactaaagtacttaatgaggctgcggta
gctggtaaaatagatacattacaaggtcttaaagagaacgttattgtaggacacagaata
ccagcaggtacaggtatgagagattatgatagcattattgtaggttctaaagaagatgta
aatgatttattaacccctactacggaggaagtaaactattaa
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