Flavobacterium arcticum: DVK85_06425
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Entry
DVK85_06425 CDS
T05621
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
fat
Flavobacterium arcticum
Brite
KEGG Orthology (KO) [BR:
fat00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
fat03016
]
DVK85_06425
Enzymes [BR:
fat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DVK85_06425
Transfer RNA biogenesis [BR:
fat03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DVK85_06425
Prokaryotic type
tRNA splicing ligases
DVK85_06425
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AXG73895
UniProt:
A0A345HBD5
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All DBs
Position
1426000..1427397
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AA seq
465 aa
AA seq
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MAKLKLRGKDLIAIGFPQNKAISIAMESMLAHYKRETKERVLVLLKEVLANPEKFMGDGV
FGKTVEALLSDKKKEAQKLNATRAPHTIFGENGIADVAKEQLYTALKLPIAHSGALMPDG
HSGYGLPIGGVLATENAVIPYGVGVDIGCRMCLSVYDISPSYLEGSKDKYVNILRNHTKF
GGREIHDNLNDHEVLDRDEFNTIPFVKKLKDKAYKQLGSSGGGNHFVEFGVVDVPANDEV
FNLPEGRYVGVLSHSGSRGLGANIAKHYTNLAMKQTPLPQEARHLAWLDLNTHDGQEYWL
AMNLAGDYASACHHDIHKRIAKALGTRPLTTVENHHNFAWKEVVEGKELIVHRKGATPAQ
KNVLGIIPGSMTAPGYIVKGKGNDLSLNSASHGAGRAFSRTKAKQSFTKSELKTVLNDHG
VTLLGAGLDEAPMAYKNIEQVMAQQTELVDVVGTFMPKIVRMDKE
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaattaaaattaagaggtaaagacctcatagcaataggattcccgcaaaacaaa
gcaataagcatcgctatggaaagcatgcttgcacactataaaagggaaactaaagaacgg
gtgttagtactattaaaagaagtacttgctaatcccgaaaaatttatgggcgatggcgtg
tttggtaaaacagtcgaagcattattaagcgataaaaagaaagaagcacaaaagctgaat
gcaacacgtgcaccccataccatttttggagaaaatggtattgccgatgtggcaaaagag
caattatatactgctctaaaattacccattgcacatagtggtgcattaatgcccgacgga
cattcgggctacgggctacccataggcggtgtgcttgctacagaaaatgctgtaataccc
tatggtgtaggggtagatatagggtgcagaatgtgcttgagtgtttatgatattagcccg
tcttacctagaagggagtaaagacaagtatgtaaatatcttaaggaaccataccaaattt
ggtggtagagaaatacatgacaaccttaacgaccatgaggtattagaccgtgacgagttt
aacacaattccgtttgtaaaaaagttaaaagataaagcttacaaacaattaggtagctcg
ggtggcggtaatcactttgtagagtttggtgttgtagatgtaccagcaaacgatgaggtt
tttaacctacccgaaggacgttacgtaggagtgctttctcatagtggttcgcgcggattg
ggagctaatatagcaaagcactataccaacctagccatgaagcaaacaccattaccacaa
gaggcacgccatttagcatggttagacctcaacacacacgacgggcaagagtactggtta
gcaatgaatcttgcgggcgattatgcttcggcatgccatcatgatattcataaaagaata
gccaaagcactaggtacacgaccactcactacagtagagaaccatcataattttgcgtgg
aaagaagttgtagaaggtaaagagctaatagtacaccgtaaaggagcaacaccagcacaa
aaaaatgtgttaggtattatacctggtagcatgacggcaccaggctatatcgtgaaaggt
aaaggtaatgacttgtcgttaaactcagcatcgcatggtgcagggagggcattttcgcga
acaaaagccaaacaatcgtttactaaaagtgagcttaaaacagtgcttaacgatcatggt
gtaacgcttttaggagcagggttagacgaagctcctatggcatataaaaacatcgaacag
gtaatggcacaacaaacagagctagtagacgtggtaggtacttttatgcctaaaattgtt
aggatggataaagagtaa
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