Flavobacterium arcticum: DVK85_09545
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Entry
DVK85_09545 CDS
T05621
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fat
Flavobacterium arcticum
Pathway
fat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVK85_09545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fat03019
]
DVK85_09545
Enzymes [BR:
fat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DVK85_09545
Messenger RNA biogenesis [BR:
fat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DVK85_09545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
P-loop_SecA
Hydrolase
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AXG74465
UniProt:
A0A345HD05
LinkDB
All DBs
Position
complement(2128902..2130170)
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AA seq
422 aa
AA seq
DB search
MKFEDLNLLKNIQQALIEEGYDSPTPIQEQAIPIILQDNDIVGCAQTGTGKTAAFAIPIL
NQLHRIVGSAKKVKYIRTLVVTPTRELALQIGESFETYGKYTNVRQLTIFGGVNQVSQTD
QLKRGVDVLIATPGRLLDLHKQGYINLDHLHHLVLDEADQMLDMGFINDVKKIVKLTPDN
RQTLLFSATMPMAIRELADTFLTNPKYVSVTPVSSTAERVKQQIYFVDKGDKRKLLYHLI
RNENLSNVLVFTRTKHGADNAVRALKKNGIEAGAIHGDKSQNARVRMLDAFKNKEISVLV
ATDIAARGIDIENLPYVINFDLPNVPETYVHRIGRTGRAGNEGTAISFCSRDELPYLKDI
EKLIRLKIKVIDGHPYPYAEGEAAEKPQGQKPDRRNSNKGNSTGKSNSRKSEASKKNKKR
WY
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgaagatcttaatttacttaaaaatatacaacaagcacttatagaagaaggg
tatgactcccctactcctatacaagagcaggcaatacccattatactacaagacaatgac
attgtgggatgtgcacaaacaggtacaggtaaaaccgcagcttttgcaatacctatactt
aaccaattacaccgcattgtaggttcggctaaaaaagtaaaatacatccgtacgctagta
gttacccctactcgtgaacttgccttacaaattggcgaaagttttgaaacctacggaaaa
tataccaacgttcgtcaattaaccatatttggtggtgttaatcaagtatcacaaacagac
caacttaaaagaggtgttgatgtacttattgctaccccaggtcgtttactagacttacac
aaacaaggatatataaacctcgaccatttacatcatttagtgttagatgaagccgaccaa
atgttagacatgggctttattaacgatgttaaaaaaatcgttaagcttacgccagataat
agacaaacattattattttcggcaactatgcctatggcaatacgcgaacttgccgatact
tttcttactaaccctaagtatgtatctgtaactcctgtatcctctacagccgaaagagta
aaacaacaaatttactttgtagataaaggcgataaacgtaaattattataccatcttatt
cgtaacgaaaacctgtctaatgtacttgtatttacacgtactaaacacggtgctgataat
gctgtaagagccttaaaaaagaatggtatagaagctggagcaatacacggcgacaaatcg
caaaatgcgagggtacgtatgctggatgcttttaaaaataaagaaatatcagtgcttgta
gctacagatattgcagcacgtggtattgatattgaaaatttaccttatgttataaacttt
gatttacctaatgtacctgaaacctatgtacaccgtataggtcgtacaggaagagcgggt
aacgaaggtacagcaatatcattttgtagtagagatgaactgccttacctaaaagatata
gaaaaactgatacgcctgaaaataaaagtaatagacggtcatccttatccttatgcggag
ggcgaagcagccgaaaaaccacaagggcaaaaacctgacaggagaaacagtaataaaggt
aattctactgggaaatcaaattcccgaaaatcagaagcctctaagaaaaataaaaagcgt
tggtattaa
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