Flavobacterium arcticum: DVK85_13275
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Entry
DVK85_13275 CDS
T05621
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
fat
Flavobacterium arcticum
Pathway
fat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DVK85_13275 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fat03019
]
DVK85_13275 (rny)
Messenger RNA biogenesis [BR:
fat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DVK85_13275 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
KH_PNO1_2nd
HDOD
KH_KhpA-B
DUF4407
YtxH
KH-I_KHDC4-BBP
HTH_37
Motif
Other DBs
NCBI-ProteinID:
AXG75314
UniProt:
A0A345HFF4
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Position
2933441..2935006
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AA seq
521 aa
AA seq
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MDSTLMIIIGCIIGLAIGFVIAKFLEKKSASGILGNAKKEVSSILKDAKSEAEAIKKDKI
LQAKEKFLELKAEHEQVILGRDKKISEAEKRIRDKESQVSSELAKAKKVNDEVETKISDY
NNRIDYLDKKQQEIDRLHKSQVEQLEVISGLSAEEAKSQLVDNLKAEAKSNAMSHIQDTI
EEAKLTAQQEAKKIIINTIQRVGTEEAVENCVSVFNIESDDVKGRIIGREGRNIRALEAA
TGVEIIVDDTPEAIILSCFDPVRREIARLALHKLVTDGRIHPARIEEVVAKTAKQIEDEI
IEVGKRTVIDLGIHGLHPELIKIVGRMKYRSSYGQNLLQHSREVAKLCGIMAAELGLNVK
IAKRAGLLHDIGKVPDAESDLPHALLGMQWAEKYGEKEEVCNAIGAHHDEIEMKFLLSPV
IQVCDAISGARPGARRQVLDSYIQRLKDLEEIAYGFGGVKSAYAIQAGRELRVIVESEKV
SDEMAATLSFEISHKIQTEMTYPGQVKITVIRETRAVNIAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggattcaacattaatgataattatcggttgcattataggattagcgattggtttcgtg
atagcaaagtttcttgaaaaaaagagtgcgtccggaattttaggtaatgcaaaaaaagag
gtctcctctatactaaaagatgctaaaagcgaagcggaagctattaagaaagataaaata
ctacaagctaaagagaagtttttagagcttaaagcagagcatgaacaagttatattaggg
cgcgacaaaaaaatatcggaagcagaaaaaagaatccgtgataaagagtcacaagtttct
agtgaacttgcaaaagcgaagaaggttaatgatgaagtagaaactaaaatttctgactac
aacaaccgtattgactatcttgataaaaagcaacaagaaatagacagattacacaaaagt
caagtagagcaactagaagttatatcaggactatctgccgaagaagcaaaaagtcaactt
gtagacaatcttaaagcagaagcgaagagcaatgctatgtcgcacatacaagacactata
gaagaggctaaactaacggcacaacaagaagccaaaaaaataataataaacacgatacaa
cgtgtaggtactgaagaagctgttgagaactgtgtatcagtatttaatatagaatcagac
gacgttaaaggacgaattattggacgtgaaggtcgtaacatacgcgcactagaagctgct
acaggtgtagaaattattgtagatgatactccagaggctattatactttcgtgttttgat
cctgtgcgtagagaaatagcacgccttgctttacacaaactggtaacagatggtagaatt
cacccagcacgtattgaagaggtagttgcaaaaacagctaagcaaattgaagacgaaatc
atagaagtaggtaaacgtaccgttatagatttagggatacacggactacaccctgaactt
ataaaaatagtaggaagaatgaaataccgttcttcttacggacaaaacttgctacagcac
tcacgcgaagtagctaagctttgtggtattatggctgctgaattagggcttaatgtaaaa
attgctaaaagagctggattactacacgatattggaaaagtacccgatgcagagagcgac
ttaccacacgcattactaggtatgcagtgggcagaaaaatatggtgaaaaagaagaggta
tgtaatgccattggtgctcaccacgatgaaatagaaatgaaattcttactatctcctgtt
atacaagtgtgtgatgctatatcgggtgctagaccaggtgcaagaagacaagtgctagac
tcatatatacaaagacttaaagatcttgaagaaattgcctatggctttggtggagttaag
agtgcctatgctatacaagctggtagagagctgcgtgtaatagtagaaagcgaaaaggtt
agcgatgaaatggctgctactttatctttcgaaatatcgcataagatacaaacagaaatg
acatatcctggtcaggtaaaaattactgtaatcagggaaacaagagctgtaaacattgct
aaataa
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