Frateuria aurantia: Fraau_0647
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Entry
Fraau_0647 CDS
T01773
Name
(GenBank) DNA-directed RNA polymerase, beta'' subunit, predominant form
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
fau
Frateuria aurantia
Pathway
fau03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
fau00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Fraau_0647
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fau03021
]
Fraau_0647
03400 DNA repair and recombination proteins [BR:
fau03400
]
Fraau_0647
Enzymes [BR:
fau01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Fraau_0647
Transcription machinery [BR:
fau03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Fraau_0647
DNA repair and recombination proteins [BR:
fau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Fraau_0647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
AFC85120
UniProt:
H8KYJ2
LinkDB
All DBs
Position
718847..723058
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLLNLFNQQRATPDFDAIKIALASPELIRSWSYGEVKKPETINYRTFKPERDGLFCAA
IFGPVKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIELAAPTAHIWFLKSL
PSRIGLMLDMTLRDIERILYFEAFVVIDGGLTALERGQLLSEDQYLEAVEEHGDEFDARM
GAEAVGELLKSLDLPAEVIRLKEEIASTNSETKLKRLTKRVKLIEAFLESGNRPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRALKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFAKLQQRGEASTIKAAKKLVEREESQVWDILEEVIREHP
VLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSIEAQLEA
RALMMATNNILSPANGEPIIVPSQDVVLGLYYMTRELVTAKGSGMVFANVAEVRRAYDNR
AVELHAKVKVRIHAVEVDADGNRTETTKLVDTTAGRALLMEILPEGLPFELANTELTKKS
ISRLINQCYRLLGLKDTVVFADQLMYTGFRFATRAGISIGIDDMIIPDQKKPILEEAEKE
VVEIQEQYQSGLVTAGERYNKVVDIWSRTNELVAKAMIDGIGTEKVVDAEGKTVNQKSMN
SLYIMADSGARGSVAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVLQYFNSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEFDCGTYEGLVMQAVVEGGDVVEPLRERVL
GRVVCEDVYAPGSDDQPIVERGTLLDEQLVEKLDHAGVQIVKVRSPIACSAEHGVCAQCY
GRDLARGHLVNMGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNVSVRTTGSLK
FNNLKTVQHSQGHLVAVSRSGEVSVIDANGRERERYKVPYGAILSLKDGEAVKAGQTVAN
WDPHTHPIVSEVAGVVRYIDFIDGVTVQSQTDDLTGLESAVVTDPKRRGTAAKDLRPIVR
LEDNQGRELKLPGTDVSAQYFLPAGAIVSIQNGAEVGVGDVVARIPQETSKTRDITGGLP
RVADLFEARKPKEPAILAERSGVISFGKDTKGKQRLIIKDVDGDEHEELIPKWRQVIVFE
GEHVEKGETVVDGEPNPHDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIESIIRQM
LRKVEITEPGDSTYLRGEQVERIRINAENEKAVSRGEHPASYQSVLLGITKASLATESFI
SAASFQETTRVLTEAAVRGTKDNLRGLKENVIVGRLIPAGTGLAYHAQRRNADGLSAFDF
EVLTGAGSSDAKPAKAEVDAGSL
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctgcttaatctattcaatcagcagcgcgcgacgcctgacttcgacgcgatc
aagatcgcgctggcgtcgccggagctgatccgctcgtggtcgtacggcgaagtcaagaag
ccggaaacgatcaactaccgcaccttcaagccggagcgtgacggcctgttctgcgccgcg
atcttcggtccggtcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgcggcgtggtgtgcgagaagtgcggcaccgaggtcaccctggccaaggtccgtcgcgag
cggatgggccacatcgagctggccgccccgaccgcgcacatctggttcctcaagtcgctg
ccttcgcgcatcggtctgatgctggatatgacgctgcgtgatatcgagcggatcctgtat
ttcgaagccttcgtggtgatcgacggcggtctgacggcgctggagcgcggtcagctgctg
agcgaagaccagtacctggaagccgtcgaagagcatggcgacgaattcgatgcccgcatg
ggtgccgaagccgtgggcgagctgctgaagtcgctggacctgccggccgaagtcatccgc
ctgaaggaagaaattgcctccaccaattccgagaccaagctgaagcggctgaccaagcgc
gtgaagctgatcgaggccttcctggagtcgggcaaccgtccggaatggatggtgctgacc
gtgctgccggtgctgccgccggacctgcgtccgctggtgccgctggacggcggccgtttc
gcgacctcggatctgaacgatctgtaccgtcgcgtgatcaaccgcaacaatcgtctgaag
cgcctgctggaactggctgcgcccgacatcatcgtgcgcaatgaaaagcgcatgctgcag
gagtcggtggatgccctgctggacaacggccgtcgcggccgtgccatcaccggcagcaac
aagcgcgcgctgaagtcgctggccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctgggcaagcgcgtcgactactccggtcgttcggtgatcgtggtggggccgacc
ctgcgtctgcaccagtgcggtctgcccaagaagatggcgctggagctgttcaagcccttt
atcttcgccaagctgcagcagcgtggcgaagcctcgaccatcaaggcggccaagaagctg
gtcgagcgcgaagagtcgcaggtctgggacatccttgaagaagtgatccgcgagcatccg
gtgctgctgaaccgtgcgccgaccctgcaccgtctgggcatccaggccttcgaaccgaag
ctgatcgaaggcaaggccatccagctgcatccgttggtctgcaccgccttcaacgccgac
ttcgacggcgatcagatggccgtgcacgtgccgctgtccatcgaggcgcagctggaagcg
cgcgctttgatgatggcgaccaacaacatcctttcgcccgccaacggcgaacccatcatc
gtgccttcgcaggacgtggtgctggggctgtactacatgacccgcgagctggtgacggcg
aagggcagcggcatggtgttcgccaacgtcgccgaagtccgtcgcgcctacgacaaccgt
gcggtggaactgcacgccaaggtcaaggtccgcatccacgccgtggaagtcgacgccgat
ggcaaccgcacggaaacgaccaagctggtggataccaccgccggtcgtgccctgctgatg
gaaatcctgcctgaaggcctgcccttcgagctggccaacaccgagctgaccaagaagtcg
atctcgcggctgatcaaccagtgctaccgtctgctgggtctgaaggacaccgtggtgttc
gccgaccagctgatgtacaccggtttccgcttcgcgacccgtgccggcatttcgatcggc
atcgatgacatgatcatccctgaccagaagaagccgattctggaagaggccgagaaggaa
gtcgtcgagatccaggaacagtaccagtcgggtctggtcaccgccggcgagcgctacaac
aaggtggtcgatatctggtcgcgtaccaacgaactggtcgccaaggccatgatcgacggt
atcggcaccgagaaggtggtcgatgccgaaggcaagaccgtcaaccagaagtcgatgaac
tcgctgtacatcatggccgactccggtgcccgaggctcggtggcccagattcgtcagctg
gccggcatgcgtggtctgatggcccgtcccgatggctccatcatcgagacgcccatcaag
gccaacttccgcgaaggcctgaacgtgctgcagtacttcaactctacccacggtgcccgt
aagggtctggcggatacggcgttgaagaccgcgaactcgggttatctgacccgtcgtctg
gtcgacgtggcccaggacgtggtgatcaccgaattcgattgcggcacctacgaaggtctg
gtgatgcaggccgtggtcgaaggcggcgatgtggtcgagccgctgcgcgagcgcgtgctg
ggtcgtgtcgtctgcgaagacgtgtatgctccgggcagcgatgatcagcccatcgtcgag
cgcggcaccctgctggacgaacagctggtcgagaagctcgatcacgccggcgtgcagatc
gtcaaggtccgttcgcccatcgcctgctcggccgagcatggtgtctgcgcccagtgctac
ggtcgcgacctggctcgtggccatctggtcaacatgggtgaagccgtcggtgtcgtggcc
gcccagtcgatcggcgagcccggcacccagctgaccatgcgtaccttccatatcggtggt
gcggcatcgcgagcggcggcggtcgacaatgtgtcggtgcgcaccacgggcagcctgaag
ttcaacaatctgaagaccgtccagcactcgcagggccatctggtggccgtgtcgcgttcg
ggcgaagtctcggtgatcgatgccaacggccgcgagcgcgagcgctacaaggtgccttac
ggcgcgattttgtcgctgaaggacggcgaggcggtcaaggccggacagaccgtggccaac
tgggatccgcatacccatccgatcgtctcggaagtggccggtgtggtccgctatatcgac
tttatcgatggcgtgaccgtgcagagccagaccgacgacctgaccggtctggagtcggcg
gtggtcaccgatccgaagcgtcgcggtaccgcggccaaggatctgcggcccatcgtgcgt
ctggaagacaaccagggccgcgagctgaagctgccgggtaccgatgtgtcggcccagtac
ttcctgcctgccggcgccatcgtgtcgatccagaacggtgccgaggtgggcgtgggtgac
gtggttgcccgtattccgcaggaaacctccaagacccgcgacatcaccggtggtctgcct
cgcgtggctgacttgttcgaagcccgcaagcccaaggagccggcgattctggccgagcgc
tcgggtgtcatcagcttcggcaaggacaccaagggcaagcagcgtctgatcatcaaggac
gtggacggtgacgagcacgaggagctgattccgaagtggcgtcaggtcatcgtgttcgaa
ggcgagcatgtggagaagggcgagaccgtcgtggacggcgaacccaatccgcacgacatc
ctgcgcctgctgggtgtcgagccgctggcagcctatctggtcaaggaaatccaggacgtt
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagtcgatcatccgtcagatg
ctgcgcaaggtggaaatcaccgagccgggcgacagcacctatctgcgcggcgagcaggtc
gaacgtatccgcatcaatgcggagaacgagaaggccgtctcccgtggcgagcatccggcc
agctaccagtcggtgctgctgggtatcaccaaggcatcgctggcgaccgaatcgttcatc
tcggcggcctccttccaggagaccacccgggtgctgaccgaggcggctgtccgcggcacc
aaggataacttgcggggcctcaaggaaaatgttattgttggccgcttgattccggcaggt
accggcctggcgtatcatgcgcagcgtcgcaatgctgacggcctgtccgccttcgacttc
gaagtgctgaccggcgcaggcagcagcgatgccaagcccgccaaggcagaggtcgacgcc
ggcagcctttga
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integrated database retrieval system
