Frateuria aurantia: Fraau_0881
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Entry
Fraau_0881 CDS
T01773
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
fau
Frateuria aurantia
Pathway
fau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fraau_0881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fau03019
]
Fraau_0881
03009 Ribosome biogenesis [BR:
fau03009
]
Fraau_0881
Enzymes [BR:
fau01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Fraau_0881
Messenger RNA biogenesis [BR:
fau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Fraau_0881
Ribosome biogenesis [BR:
fau03009
]
Prokaryotic type
rRNA processing factors
Fraau_0881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AFC85350
UniProt:
H8L0U5
LinkDB
All DBs
Position
complement(974924..978184)
Genome browser
AA seq
1086 aa
AA seq
DB search
MKRMLINATQREELRVAIVDGQTLYDLDIEIPSREQKKANIYKGRITRVEPSLEACFIDY
GGERHGFLSLKEVAREYFTPGVDPHKAGIRELLKEGQELVVQVEKEERGNKGAALTTFIS
LAGRYMVLMPNNPKAGGVSRRIEGEDRQALKEALEHLTVPDSVGLIVRTAGLGRDAEELQ
WDLDYLLQLWKAISQAASAQRAPFLIYQESKLFIRALRDYLRNDIGEILIDEESLYNDAR
QFMQQVMPNSLRKLKLYQDDTPLFSRYQIETQIESAFERQVRLPSGGSIVIDQTEALTSI
DINSARATKGGDIEETAFNTNLEAAVEIARQARIRDTGGLIVIDFIDMDSPKHQREVEEQ
LKSALKLDRARIQVGRISRFGLLEMSRQRLRPSLGEATQIVCPRCEGHGHIRSVESLALS
TLRLIEEHAMKDNTGQVLVQAPPTVANYMLNEKRASVVEIEMRHKVHVVVVADRKLQTPH
IEIQRIREVDMGEHSKPSYERLTAVSATPIPKMGQALGSSEQPAVSGIMPASPAPVREEA
EAAAPVAAAPAARPTASAPQGGLFSRLFSWLRAPAAAEPEATAAPVASEKGRARSNPAET
GNGRGQRPSREDRRSSRNDDSQDGSGQNGRGNRGERGERGERGERQDRASNPAKHGNNAK
RNRNERPERGERAERQERPEKTERPERNERNDVQARQAAPKPPRPPRQNAAETAVEGDEN
KTRQQNRVRQEQVRKPENSPAVETEPKPAPAPVPVDDVPPEQAVTAENAIANPSEIADQS
DQGETGSGTSRRRRGRRGGRRRRRPEDGLPGTESTEATEATGNEGDDATADKDDAVATEA
PADTTPKAPRKPRQPRQPRQPAVEPDSGSDGRPERGENRSLDLPMLPPVPTEGREAQAVT
PPIDRPAAVLPATPAKVEVVAEPVTVTGPTRPSPAPERPVPAPPVVAPAVTPASVTPAAT
SQPAKSETSAIAADVVKSDVVEAKVEAKPAPAAATVEAATDVVAVAVPEPTKPMAPVMAV
PATAKAVPEPVASFEVAETATSEPAPVPRQAGPAESGAAESAPPATTEPVAKPEPADRSE
QPSSQG
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtatgttgatcaacgcaactcagcgtgaggagttgcgtgtggctatcgtcgat
ggccagacattatatgatctggacattgaaatcccatcacgggaacagaaaaaagccaat
atctacaaaggtcgcatcacccgcgtcgaaccctcgctggaagcctgtttcatcgattac
ggcggcgagcgccacggctttctgtcgctgaaggaagtcgcccgcgaatacttcaccccg
ggcgtggacccgcacaaggccggcatccgcgaactgctgaaggaaggccaggaactggtc
gtccaggtcgaaaaggaagagcgtggcaacaagggcgcggccctgaccaccttcatcagt
ctggccggccgctacatggtgctgatgccgaacaaccccaaggccggcggtgtctcccgt
cgtatcgagggcgaggacaggcaggccctgaaggaagccctggagcacctgacggtgccc
gattcggtcggtctgatcgtgcgtaccgccggcctgggccgcgacgccgaggagctgcaa
tgggatctggactatctcctgcagctgtggaaagccatttcccaggcggccagcgcccag
cgcgcgcccttcctgatctatcaggaatcgaagctgttcatccgcgccctgcgcgactat
ctgcgcaatgacatcggcgaaatcctgatcgacgaggagtcgctgtacaacgatgcacgc
cagttcatgcagcaggtgatgcccaactccctgcgcaagctgaagctgtaccaggacgat
accccgctgttctcgcgctatcagatcgaaacccagatcgagagcgccttcgagcgccag
gtcaggctgccctccggcggttcgatcgtgatcgatcagaccgaggcgctgacctcgatc
gacatcaactcggcgcgcgccaccaagggtggcgacatcgaggaaaccgccttcaacacc
aacctggaagcggcggtggaaatcgctcgccaggcgcgcatccgcgataccggcggactg
atcgtgatcgacttcatcgacatggacagccccaagcaccagcgcgaagtggaagagcaa
ctgaagagcgccctgaagctggaccgagcccgcatccaggtcggccgcatctcgcgtttc
ggactgctggaaatgtcgcgtcaacgcctgcgcccctcgctgggcgaagcgacccagatc
gtctgcccgcgttgcgagggccatggtcatatccgcagcgtcgaatcgctggcgctctcg
accctgcgtctgatcgaagagcacgcgatgaaggacaacaccgggcaggtcctggtgcag
gccccgccgaccgtcgccaactacatgttgaacgagaagcgggccagcgtggtcgagatc
gagatgcgccacaaggtgcatgtcgtcgtcgtggccgatcgcaagctgcagactccgcac
atcgagatccagcgcatccgtgaagtggacatgggtgagcattccaaacccagctacgag
cgcctgaccgcggtcagcgccacgccgatcccgaaaatgggtcaggcgctgggcagcagc
gagcagcccgccgtcagcggcatcatgccggccagccctgcaccggtccgcgaggaagcc
gaggccgccgcccccgtggcagcggctcccgcagcccgtccgacggcgagcgcaccgcag
ggcggactgttctcgcgactgttctcctggctgcgggctcccgcggctgcggaacccgaa
gccaccgccgccccggtcgccagcgaaaaggggcgcgcacggtcgaatccggccgaaacc
ggcaacgggcgcggccagcgtccgtcgcgcgaagatcgccgctcaagccgcaacgacgac
tcgcaggatggttccggccagaacggtcgtggcaatcgcggtgagcgcggtgagcgcggt
gagcgcggtgagcgccaggatcgtgcatcgaacccggccaagcatggcaacaacgccaag
cgcaatcgcaacgaacgtccggagcgtggcgagcgggcggaacgccaggaacgtccggaa
aagaccgaacgtcccgaaagaaacgaacgcaacgacgtccaggctcgacaggcggctccc
aagccgccccgcccgcctcgccagaacgcggccgagactgcggtcgagggggatgaaaac
aaaacccgtcaacagaaccgtgttcgtcaggagcaggttcgcaagccggaaaattcgccg
gctgtcgaaaccgaaccgaagccggcaccggctcccgtacccgtcgacgacgtgccgcct
gagcaggccgtcacggctgaaaacgccatagcgaacccgtccgaaatcgccgaccagagc
gaccagggtgaaaccggaagcggcacctcgcggcgacgtcgcggccgccgcggcggtcgt
cgtcgtcgtcgtccggaagacggtctgcccggcacggaatcgaccgaagcaaccgaagca
accggcaacgaaggtgatgatgcgaccgccgacaaggacgatgccgtcgccaccgaggcg
cctgcggacaccacccccaaggcaccgcgcaagccccgtcagcctcgccagccccgtcaa
ccggccgtcgagcccgactctggcagcgacggccgcccggagcgtggcgaaaaccggagc
ctggatctgcccatgttgccgccggtcccgaccgaaggccgtgaagcccaggccgtgacg
cccccgatcgacaggcccgctgcagtgcttcccgcgacgcctgccaaggtcgaggtcgtg
gccgagccggtgacggtgaccgggccgacgcggccgtcacctgcgccggagcggccggta
cccgccccgccagtcgtcgcgcctgccgtgaccccggcatcggtcacccctgcggccacc
agccagccggcaaagtcggagaccagcgccatcgcagccgatgtcgtcaaatccgatgtc
gtcgaagccaaggtcgaagccaagcccgctcccgccgccgcaacggtcgaggccgccacg
gacgtcgtggccgtggccgtgcccgagccgaccaagcccatggctccggtcatggcagta
ccggcaacggccaaggccgtacccgagcccgttgccagcttcgaagtggctgaaaccgcg
acctccgagccggcgcctgtgccccggcaagccggaccggcggaatcaggggcggccgag
tccgcaccgccggcgaccaccgaaccggtggccaagccggagccggccgaccgatcggaa
cagccctcctcccagggctga
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