Frateuria aurantia: Fraau_0897
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Entry
Fraau_0897 CDS
T01773
Name
(GenBank) transcription-repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fau
Frateuria aurantia
Pathway
fau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Fraau_0897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fau03400
]
Fraau_0897
Enzymes [BR:
fau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Fraau_0897
DNA repair and recombination proteins [BR:
fau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Fraau_0897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AAA_30
Glyco_tran_WecG
AroM
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFC85366
UniProt:
H8L1K6
LinkDB
All DBs
Position
complement(995629..999093)
Genome browser
AA seq
1154 aa
AA seq
DB search
MTPRFPTVPLPTSPRHRQFLLRPAGSAEALLLAQTAAGHKGLLVAVCADTQGAIALESEL
KLFAGDLPVLQFPDWETLPYDVFSPHPDVVSQRIATLYRLPALERGILVVPVATLMQRIA
PASHIRGSGLMLYRGGRLDLVEEQRRLQSVGYRNVPQVSEPGDYAVRGSVLDIYAMGAPE
PYRVELLDDEIESIRRFDPESQRSQDQIESVELLPAREFPVTEQAARDFRQRLRERFPID
IRRCPVYQDMKEGSTPGGIEYYLPMFFEATATLFDYLPAGAIFVLGEEVLASAERFWTQI
ESRYDQRAHDIERPVLPPAELYLPVEALREQLNLRLRIEEVPAGHAHAFDSGSQSAPEVP
LNAKGQESGTALRQLLQNDPRPLLIAADSAGRREALIEQLAELDLRPHGIDSWAQYLPLW
LDGKAPPLAITVAPLEQGFSLQQPGLILLTERELLGERVRTERRRRRGTARDPEAIIRDL
TELTIGAPIVHVDHGVGQYQGLLSMDIGGMAGEFLTIEYAKGDKLYVPVAQLGLVSRYSG
TAPELAPLHSLGGDAWERARKKAAEKVRDVAAELLGIYAQREARGGQSLEIDRRMVESFG
ASFPFDETPDQEQAIKAVLGDLSAPRAMDRVICGDVGFGKTEVALRAAFAAATAGKQVAV
LVPTTLLAQQHYRNFADRFADWPIRVDVLSRFRAKKDVDAALQRLAEGQIDVIIGTHKLL
QPEIRFKDLGLVVVDEEQRFGVRQKEQLKKLRAEVDLLTMTATPIPRTLNMAMSGLRDLS
LIATPPAHRMAVSTFISTWEPALIREAFQRELARGGQVYLLHNEVESIERCARDLQELIP
EARIGIAHGQLPERELEQVMADFHRQRFNVLVCTTIIETGIDIPTANTIIINRADRFGLA
QLHQLRGRVGRSHHRAYAYLIVPDRKTISADAEKRLEALASLEELGAGFTLATHDLEIRG
AGELLGDEQSGQIQEIGFGLYTELLERAVRALKSGKVPDFDLSSEHETEVELHLPALIPD
DYLPDVHTRLTLYKRIASVRTDAALRELQVEMIDRFGLLPEQARTLFAVASLKLAATPLG
IRKLEFGPLGGRLQFREKPDVDPMRIIQLVQRQPRIYKLDGQDKLRISMELEDGPARIEA
ARHLLRELGARIGT
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgaccccacgattcccgactgttccgcttccgacctcaccccgccaccggcagtttctg
ctccgtccggccggctccgccgaagccctgctgctggcgcagaccgctgccggccacaag
gggctgctggttgccgtgtgcgcggatacgcagggtgccatcgcactggaaagcgagctg
aagctgtttgcgggcgacctgccggtgttgcagttcccggactgggagaccctgccctac
gatgtgttcagcccgcatccggatgtagtctcgcaacggattgccacgctttatcggtta
ccggcactggaacggggcattctggtcgtacccgtcgccacgctgatgcagcggatcgca
ccggccagccacatccgcggcagcggcctgatgctgtaccggggcggacggctggatctg
gtcgaggagcaacggcgcctgcaatcagtgggctaccgcaatgtgccccaggtcagcgag
ccgggcgattatgcggtccgcggctcggtgctggacatctacgccatgggcgcgcccgaa
ccctatcgggtggagctgctggatgacgagatcgagtcgattcgccgcttcgatccggag
agccagcgctcgcaggaccagatcgagtcggtcgaactgctgccggcccgcgaatttccg
gtcaccgagcaggcagcccgcgacttccgccagcgcctgcgcgaacgcttccccatcgat
atccggcgctgccccgtctaccaggacatgaaggaaggcagcacgcccggcggcatcgag
tactacctgccgatgttcttcgaggcaaccgccaccctgttcgactatctgccggccggg
gccatcttcgtgctgggcgaggaggtgctggcatcggccgagcggttctggacccagatc
gaatcgcgttacgaccagcgcgcacatgacatcgaacggccggtactgccgcctgccgaa
ctgtatctcccggtggaggcactgcgcgaacagctcaacctgcggctgcggatcgaggaa
gtgccggccggccacgcccatgccttcgacagcggcagccagtccgccccggaagtcccg
ctcaatgccaaggggcaggaatcgggcacggccctgcgccagttgctgcaaaacgatccg
cggccgctgctgatcgcggccgattcggccggccgccgcgaggccctgatcgaacagctc
gccgagctggacctgcgtccgcacggcatcgacagctgggcgcagtatctgccgctgtgg
ctggatggcaaggcgccgccgctggcgatcacggtggcaccgctggagcaaggcttcagc
ctgcagcagccgggcctgatcctgttgaccgaacgcgaactgctgggcgaacgggtccgt
accgagcggcgccgacggcgcggcacggcacgtgatccggaggccatcatccgggatctg
accgagctgaccatcggcgcgcccatcgtgcatgtcgaccatggcgtgggccaataccag
ggcttgctgtcgatggatatcggcggcatggccggcgaattcctgaccatcgaatatgcc
aagggcgacaagctgtatgtgccggtggcccagttgggcctggtcagccgctacagcggc
accgccccggaactggcccccctgcattcgctgggcggcgatgcctgggaacgggcccgc
aagaaggcggccgaaaaggtccgtgacgtggctgccgaactgctgggcatctatgcccag
cgcgaggcccgtggcggacagtcgctggaaatcgaccggcgcatggtcgaatcctttggc
gccagctttcccttcgacgaaaccccggaccaggaacaggccatcaaggcggtgctgggc
gatctgtccgcgccacgggcgatggatcgcgtgatctgcggcgatgtcggtttcggcaag
accgaagtggccttgcgcgcggcctttgccgccgccaccgccggcaagcaggtcgcggtg
ctggtgccgactaccctgctggcccagcagcactatcgcaacttcgccgaccgtttcgcc
gactggccgatccgggtcgacgtgctgtcacgctttcgcgccaagaaggatgtcgatgcc
gccctgcagcggctggccgaagggcagatcgacgtcatcatcggcactcacaagttgctg
cagccggaaatccgcttcaaggacctgggcctggtggtggtcgatgaagagcagcgtttc
ggcgtgcgccagaaggagcagctgaagaagctgcgcgccgaggtcgatctgctgaccatg
acggcgacgccgatcccgcgcaccttgaacatggcgatgagcggactgcgcgacctgtcg
ctgatcgcgaccccgccggcccaccgcatggccgtgagcactttcatttccacctgggaa
ccagccctgatccgcgaggctttccagcgcgagctggcccgtggcggccaggtctatctg
ctgcacaacgaagtggaaagcatcgagcgctgcgcccgtgatctgcaggaactgattccc
gaggcccgcatcggcatcgcccacggtcagctgcccgagcgcgagctggagcaggtgatg
gccgacttccaccggcagcgcttcaacgtgctggtctgcacgaccatcatcgagaccggc
atcgacatccccaccgccaataccatcatcatcaaccgcgccgatcgtttcgggctggcc
cagctgcaccagctgcgcggtcgcgtcggccgttcgcaccatcgggcctacgcctatctg
atcgtgccggatcgcaagacgatcagcgccgatgccgagaaacggctggaggccctggcc
tcgctggaggagctgggcgccggcttcaccctggctacccacgatctggaaatccgcggc
gccggcgaactgctgggcgacgaacagtccggccagatccaggaaatcggcttcggtctg
tataccgagctgctggagcgggcggtacgcgccctgaagtcgggcaaggttccggatttc
gatctcagctccgaacacgagaccgaggtcgagctgcatctgccggcgctgatccccgac
gactatctgccggatgtgcatacccggctgaccttgtacaagcgcattgccagcgtccgc
accgatgccgctctgcgcgagctgcaggtagagatgattgatcgcttcggactgctgccg
gagcaggccaggaccttgttcgcagtagccagtctgaagctggcggcgaccccgctgggc
atccgcaagctggaattcggcccgctgggcggtcgcttgcagttccgcgagaaacccgat
gtcgatccgatgcggatcatccagctggtccagcgtcagccgcggatctacaagctggac
ggtcaggacaagctgcgcatcagcatggagctggaggacggtcctgcgcggatcgaggcc
gcccgccatctgctgcgtgaactgggtgcacgcatcggcacctga
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