Frateuria aurantia: Fraau_1175
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Entry
Fraau_1175 CDS
T01773
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fau
Frateuria aurantia
Pathway
fau03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fau00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fraau_1175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fau03019
]
Fraau_1175
03009 Ribosome biogenesis [BR:
fau03009
]
Fraau_1175
Enzymes [BR:
fau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Fraau_1175
Messenger RNA biogenesis [BR:
fau03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fraau_1175
Ribosome biogenesis [BR:
fau03009
]
Prokaryotic type
rRNA helicases
Fraau_1175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
P-loop_SecA
adh_short
Motif
Other DBs
NCBI-ProteinID:
AFC85634
UniProt:
H8L4G0
LinkDB
All DBs
Position
complement(1271803..1273614)
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AA seq
603 aa
AA seq
DB search
MSSPVSESSPAPAGFSALPLRPEILQALREVGYESPSPIQSATIPPLLEGRDVLGQAQTG
TGKTAAFALPVLSRIERDSNKPQALVLAPTRELAIQVAEAFQRYAAHMPGFHILPIYGGQ
SYGPQLQALRRGVQVIVGTPGRVIDHLTRGSLDLSELKFLVLDEADEMLRMGFIDDVEKV
LEATPPTRQVALFSATMPSQIRKIAQQHLKTPVEVTIKAATSTNTNIRQRYWWVSGLHKL
DAMTRILEAESFDAMIVFARTKQATEELSERLQARGFAAAAINGDIAQPQRERVIQQLKD
GKLDILVATDVAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVTPRE
KGMLRAIERATRQPIEEMKLPTIEAVNDRRVNRFKDRITETLGLDGLELFQQLIEQYEQE
HNVPAIEIAAALAKLSQGDQPLLLTPPPKREPRPFENDERRQRSERGDRPERGDRDSRAP
RPMREHRTEEGKRTYRIEVGHQHGVKPGNIVGAIANESGLESQFIGKLSIRGEYTLVDLP
DGMPREVFDHLGNVWVAQRQLKIHEWDGTESPDAGGSAPPRRGGGGYGKGRPGGRGPRPK
FSR
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcccctgtttccgaatcctcgccggcccctgccggtttttccgctttgcctttg
cgccccgaaattcttcaggcgctgcgcgaggtcggatatgaatccccttcccccatccag
tccgccaccattccgccgctgctcgaaggccgcgatgtgctgggccaggcccagaccggc
accggcaagaccgcggccttcgccctgccggtgctctcgcgcatcgagcgcgacagcaac
aagccgcaggcactggtgctggccccgacccgcgaactggccatccaggtcgccgaggcc
ttccagcgctatgccgcgcacatgccgggtttccacattctgccgatctacggtggccag
agctacggtccgcagctgcaggccctgcgtcgtggcgtacaggtcatcgtcggcaccccg
ggccgtgtcattgaccatctgacccggggctcgctggacctgtccgagctgaagttcctg
gtgctggacgaagccgacgaaatgctgcggatgggctttatcgacgacgtcgaaaaagtt
ctggaggccaccccgccaacccgccaggtcgcgctgttctcggccaccatgccttcgcag
atccgcaagatcgcccagcagcacctgaaaacgccggtcgaagtgaccatcaaggccgcg
accagcaccaataccaatatccgccagcgctactggtgggtcagcggcctgcacaagctg
gacgcgatgacccgcatcctggaggccgagtccttcgatgcgatgatcgtcttcgcccgc
accaagcaggccaccgaagagctgtccgaacgcctgcaggcacgcggttttgccgccgcc
gccatcaacggcgatatcgcccagccgcaacgcgagcgcgtgatccagcagctgaaggac
ggcaaactggacattctggtggccaccgatgtggctgcccgcggtctggacgtcgagcga
atcagccacgtactgaactacgacatcccgtatgacacggaaagctatgtgcaccgcatc
ggccgtaccggtcgcgccggccgcagcggcgaggcgatcctgttcgtcacgccccgcgaa
aagggcatgctgcgggcgatcgagcgtgctacccgccagcccatcgaggaaatgaagctg
ccgacgatcgaggccgtcaacgaccgtcgcgtcaaccgtttcaaggaccgcattaccgag
accctgggcctggacggactggagctgttccagcagctgatcgagcagtacgagcaggag
cacaatgttccggccatcgagatcgctgccgcgctggccaagctgtcgcaaggcgaccag
ccgctgctgctgactccgccgcccaagcgcgagccacgcccgttcgaaaatgacgagcgc
cgccagcgcagcgaacgcggcgatcgtccggagcgtggcgaccgtgacagccgcgccccg
cgcccgatgcgtgaacaccgtaccgaggaaggcaagcgcacctaccgcatcgaagtcggt
caccagcacggtgtgaagcccggcaacatcgtcggcgccatcgccaacgaaagcggtctg
gagagccagttcatcggcaagctcagcatccgtggcgaatacaccctggtcgatctgccg
gacggcatgccgcgcgaggtattcgatcacctcggcaatgtctgggtcgcccagcgccag
ctgaagatccatgaatgggacggcaccgaatcacctgacgccggcggttctgccccgcca
cgtcgcggcggtggcggctatggcaagggccgccccggcggtcgcggtccgcgcccgaag
ttctcgcgctga
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