Flavobacterium acetivorans: LNP19_00705
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Entry
LNP19_00705 CDS
T10181
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
fav Flavobacterium acetivorans
Pathway
fav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP19_00705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fav03019
]
LNP19_00705
03400 DNA repair and recombination proteins [BR:
fav03400
]
LNP19_00705
Enzymes [BR:
fav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LNP19_00705
Messenger RNA biogenesis [BR:
fav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LNP19_00705
DNA repair and recombination proteins [BR:
fav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LNP19_00705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DnaD_N
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
UFH35590
LinkDB
All DBs
Position
162113..164008
Genome browser
AA seq
631 aa
AA seq
DB search
MSEALQILQKYWKHDTFRSLQNEIIDSVLSGQDTFALMPTGGGKSICFQIPAMMNIGICL
VISPLVALMKDQVANLQQRNIKAIALTGGIKSDEMIDLLDNCQFGNYKFLYLSPERLQSD
WILDRIKNLPINLITIDEAHCVSQWGHDFRPAYLKISNLKTHFPKTPFLALTATATPKVK
EDIINELGLQKPQLFQKSFARKNIAYMVFEVEDKLFRIEQILKKNPQSSIIYVRNRKSCL
DISSQLQSLGFKSTYYHGGLTPKEKDKNMQLWMQNQAQVIVATNAFGMGIDKADVKTVIH
IQLPENLENYYQEAGRAGRNNEKAFAVLLTSPSDIIQAENQFIHVLPDKKFLNQVYLKLS
NFFQIAYGEGINEQFSFNLNQFCLKYNFPVLKTYNAMQFLDRQGIITLSQEFSEKITLQF
LIPSKETLRYMSLNPKDEEIILTILRTYPGIHEMPIPFNLELIARKSNHTETQVHAVLEK
LKEKDIIEYHSKNNDSKLTFNEVREDERTISRVSKYLENQNALKKQHLQSVLNYINEKES
CKSKLILSYFGEKTTEDCGICSYCITKKGKKTNHNLLSKEIICLLQTEDLNSREIQDKIN
NQSEDVIFVIQQLLERESITVKSNNKYTLKP
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaagcattacaaattctccaaaaatactggaaacacgatacttttagatcgctg
caaaacgaaattattgattccgttttaagcggtcaggacacttttgcgctaatgccaacc
ggcggaggaaaatcgatttgttttcaaattccggccatgatgaacataggaatttgcttg
gttatttcgcctttggtcgctttgatgaaagatcaggttgccaatttacaacagcgaaac
atcaaggcaattgcattgacgggcggaataaaatcggacgaaatgattgatcttttagac
aattgtcagttcggaaattacaaatttctctatctatccccagaacgattgcaatctgac
tggattctggaccgaataaaaaacctccctataaatctaataacaattgatgaggcgcat
tgcgtttcgcaatgggggcatgatttccgtccggcctatttaaagatttccaacttaaaa
acgcattttccaaaaacaccttttttagccttaacagccactgcgactccaaaagttaaa
gaagacatcatcaatgaattgggattgcaaaaaccgcaattgttccaaaaatcttttgct
cgcaagaacatcgcctatatggtttttgaagtcgaggacaaacttttcagaatagaacaa
atactgaaaaagaatcctcaatcttcaatcatatacgtacgaaacagaaaatcatgctta
gatatttcgtcccaactgcagtccttaggatttaaatctacctattatcatggtggatta
acgccaaaagaaaaagataaaaacatgcaactttggatgcaaaatcaagcacaagtaatt
gttgccacaaatgcgtttggaatgggaattgacaaagccgatgtgaaaacagttattcat
attcaacttcccgaaaacttagaaaattactatcaggaagcaggtcgagctggaagaaat
aacgaaaaagcctttgccgtattattgaccagcccttcggatattattcaggccgaaaat
cagttcattcatgttctacccgacaaaaaatttcttaatcaagtttatctaaaattatcc
aacttctttcagattgcttacggagaaggaataaacgaacagttttcttttaatttaaat
caattctgtttaaaatataattttcctgttttaaaaacgtacaatgcaatgcagtttttg
gacagacaaggaatcattactttgtctcaggagttctccgaaaagatcaccttacaattt
cttattccttcaaaagaaacactgcgttacatgagtttaaatccgaaggatgaagaaatt
attttgaccattttgcgtacctaccccggaatccatgaaatgccaattccttttaatcta
gaattaattgcaagaaaatcaaatcatacggaaactcaagtacatgccgttttagagaaa
ttaaaagaaaaagacatcattgaataccattcgaaaaacaatgattctaaattaactttt
aacgaagtacgagaagatgagagaacaattagcagagtttcaaaatatttagaaaatcaa
aatgcattaaaaaagcaacatcttcaatccgtattgaattacatcaacgaaaaagaaagt
tgcaagagcaaactaattttgagttattttggagaaaaaacaacagaagattgcggcatt
tgctcctattgtatcactaaaaaagggaaaaagacaaaccataatctcctttcgaaagaa
atcatttgtttattacaaacagaagatttaaattccagagagattcaagacaaaatcaat
aatcagtcggaggatgttatctttgtcattcagcaattattagaaagagaaagtatcaca
gtaaaatcgaacaataaatataccttaaaaccataa
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