Flavobacterium acetivorans: LNP19_03080
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Entry
LNP19_03080 CDS
T10181
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
fav Flavobacterium acetivorans
Pathway
fav03410
Base excision repair
fav03430
Mismatch repair
fav03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LNP19_03080 (recJ)
03430 Mismatch repair
LNP19_03080 (recJ)
03440 Homologous recombination
LNP19_03080 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fav03400
]
LNP19_03080 (recJ)
DNA repair and recombination proteins [BR:
fav03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LNP19_03080 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LNP19_03080 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LNP19_03080 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Toprim
Motif
Other DBs
NCBI-ProteinID:
UFH36032
LinkDB
All DBs
Position
694358..696046
Genome browser
AA seq
562 aa
AA seq
DB search
MRWTLKPKPSEDKIKHLAQALNVEDFVATLLVQRGIETFEEAKAFFRPSLDHLHDPYLMK
DMDKAVGRIEKAIENQQRILVFGDYDVDGTTAVSLVSSYLKSYYPNVATYIPDRYDEGYG
VSFKGIDFADDNGFSLIIALDCGIKSIDHVAYAKERNIDFIICDHHRPGNELPEAVAILD
PKRDDCHYPYDELCGCGIGFKLIQALGANRNQTIADLVPYLDLVAAAIAADIVPMTGENR
VLAYFGLQVINSDPRPGIKALIHQIKKQTLDITDVVFIIAPRINAAGRIKHGNHAVELLT
EFDFEQAQQFASEIEQYNSDRKDLDKQITKEAFQQIEKNQEQERFTTVVYQEDWHKGVIG
IVASRLIETYYRPTLVFTKSGDKYAASARSVKGFDVYNALDACSEHLEQFGGHMYAAGMT
LKEENYSIFKEAFEKQVQETIHPDMLTPEIEIDAEINFSDITPKLIRILKQFEPFGPQNM
TPVFLSKNVKDTGYAKKLGAEDEHLKLFLKQNTSEGIPAIGFGLGNKIDLTTNQKPFQAA
YCIDENEWNGKVSVQLRLKSIK
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggactcttaaaccaaaaccttccgaagataaaatcaagcatttggcgcaagcc
ttgaatgtggaagattttgtggccactttattagtgcaacgcggcattgaaactttcgaa
gaagctaaagcttttttccgcccatcgctagatcacctgcacgatccttacttgatgaaa
gacatggataaagcggtcgggcgaatagaaaaagcgatcgaaaatcagcaacgcatcctt
gtttttggcgattatgatgttgacggaaccacggccgtttctctcgtttcttcctattta
aaaagctattacccaaatgtggctacctatattccggatcgttatgacgaaggttatggc
gtttccttcaaaggaattgactttgccgatgacaatggattttcgttgatcatcgcctta
gattgcggtataaaatcaattgatcatgtcgcttacgcaaaagagagaaacatcgacttt
atcatttgtgaccaccatagacccggaaatgaattgcccgaagcagttgctattttggat
ccaaaaagagacgattgccactatccttatgatgaattgtgcggttgcggaattggcttt
aaattgattcaggctttaggcgcgaacagaaatcaaaccattgccgatttagtaccttat
ttagatttggttgccgccgccattgccgccgatatcgtcccgatgacaggtgaaaaccga
gtgctggcttattttggattgcaagtaatcaatagcgatccaagacccggaattaaagct
ctgattcatcaaataaaaaaacagactttagatattaccgatgtcgtttttatcattgca
cctcgaatcaatgcagccggccgaatcaaacatggcaatcatgccgtggaattattaact
gaatttgattttgagcaagcccaacaatttgcttcggaaatagaacaatataattcagat
cgtaaagatctggacaaacagattaccaaagaagcttttcagcaaattgaaaaaaatcaa
gaacaagaacgatttacaaccgtagtttatcaagaagattggcacaaaggcgttatcgga
attgtcgcttcccgattgattgaaacctattatcgtcctacactcgttttcacaaaaagt
ggcgataaatatgctgcttcggcccgttctgtaaaaggctttgacgtttataatgccctt
gatgcctgctcggaacatttggagcaatttggcggacacatgtatgccgctggaatgaca
ttgaaggaagaaaattattccattttcaaagaggcttttgagaaacaggttcaggaaacc
attcatccggatatgttaactccggaaatcgagattgatgccgaaatcaacttttcggat
atcactccaaaactcattcggattttaaaacaatttgaaccttttggcccacaaaatatg
acaccggttttcttgagcaaaaatgtaaaagataccggttatgctaaaaaattaggtgct
gaagacgagcatttgaaactctttctaaaacaaaatacttctgaaggaattccggcaatc
ggtttcggattaggtaataaaatagatttaactacaaatcaaaaaccctttcaagcagcc
tactgtattgatgaaaatgaatggaacgggaaagtttctgttcaattgagattaaaaagt
ataaaataa
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