Flavobacterium acetivorans: LNP19_04190
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Entry
LNP19_04190 CDS
T10181
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
fav Flavobacterium acetivorans
Pathway
fav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP19_04190 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fav03019
]
LNP19_04190 (rnr)
03016 Transfer RNA biogenesis [BR:
fav03016
]
LNP19_04190 (rnr)
Enzymes [BR:
fav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LNP19_04190 (rnr)
Messenger RNA biogenesis [BR:
fav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LNP19_04190 (rnr)
Transfer RNA biogenesis [BR:
fav03016
]
Prokaryotic type
tRNA degradation factors
LNP19_04190 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
OB_RNR_1st
S1
OB_HELZ2
HTH_11
S1_2
DUF5604
Motif
Other DBs
NCBI-ProteinID:
UFH36248
LinkDB
All DBs
Position
929400..931592
Genome browser
AA seq
730 aa
AA seq
DB search
MGKRLRKPVKKEKDFSEKIIKILSQNANKAFNYKQIGAKLELDDTQSRNQIIKDLKILAA
QKKIIESEPGKYLIKAVSKDYYEGKIDMTGRKTAYFVCADLEEDVFIPTNNLNHALDKDT
VKVYVYNRRKGKRPEGEVIEVIERHKTDFVGVIDIQKNFSFVSTANPKMYTDIFIPKDKI
GEAEQGDVVLVHIEDWPARADSPFGKVIKVLGKPGEHDTEIHAILAEYGLPAEFPIEVET
FAQKIDTSIQESEIAKRRDMRDTLTFTIDPKDAKDFDDALSFKKLENGNYEIGIHIADVS
YYLEEGTILDDEAYQRATSVYLVDRVVPMLPEVLSNFACSLRPNEEKYTFSAVFEITDKC
EVINQWFGRTVIYSNQRFAYEEAQYIIETKDDVIPEEISITGSSYKVSEEIVSATLKMDE
LAKIFRRKRMNEGAISFDKVEVKFNLNEEGEPEGVYFKVSKDANHLIEEFMLLANRKVAE
YIGKQKKTFIYRIHDEPNEDKLIAMQTVIAKFGYKIDFRNKGDISKSLNALMEEVNGKKE
QNLIDTLAIRSMSKAKYSTDNIGHYGLAFDYYSHFTSPIRRYPDVMVHRLLQFYLDGAKS
ADEELYETKCLHCSTMEGLATNAERDSIKYMQVKYMQDHQDQEFLGVISGVTEWGIYVEI
IENKCEGMVRIRDIKDDYYTFDEKQYALVGATSNKLLQLGDEIFVKVKNADLVKKQLDFN
FLRRIEETIK
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaaagattaagaaagccggtaaaaaaagagaaagatttctctgaaaaaattata
aaaatattatcgcaaaatgccaataaagcattcaattataagcaaataggagcaaagtta
gagctcgacgatacccaaagcagaaaccagattatcaaagatttgaagattttggctgca
caaaaaaaaattattgaatccgaacccggaaaatatttaataaaagcagtaagcaaagat
tattacgaaggaaaaattgatatgacaggccgtaaaacggcttattttgtttgcgctgat
ttagaagaagatgtttttattccgaccaataatttaaatcatgctttagataaagatacc
gtaaaagtatatgtttacaatcgcagaaaggggaaaagaccggaaggcgaagttattgaa
gtgatcgaaagacataaaacggactttgttggagtaattgatattcagaagaatttttct
tttgtgtcaacagccaatccaaaaatgtataccgatatttttattccaaaagacaaaata
ggcgaggcagagcaaggagatgtggttttggttcatattgaagattggcctgcaagagcc
gatagtccttttggaaaagtgataaaagtattaggaaaaccgggagaacatgatactgaa
attcatgctattttggccgaatatggtttgcccgctgagtttcctattgaagtagaaact
tttgcacaaaaaattgatacttcgattcaggaaagcgagattgcaaagcgtcgtgatatg
cgtgatactttgacatttactattgacccaaaagatgctaaggattttgatgatgcctta
tcatttaaaaagttagaaaatggaaattacgaaattggtattcatattgccgatgtttct
tactatctggaagaaggaaccatcttagatgatgaagcttatcaaagagctacttcggtt
tatcttgtagatagggtagtacccatgttacccgaagttttatccaattttgcctgttca
ttgcgtccaaatgaagaaaaatataccttctcggctgtatttgaaattaccgataaatgt
gaagttatcaaccaatggtttggaagaaccgtgatttattccaatcagcgatttgcttat
gaagaagcgcaatacatcatcgagacaaaagacgatgtaattccggaagaaatttcgata
acgggatcttcctataaagtttcggaagaaattgtctctgcgactctaaaaatggatgaa
ttagccaagattttcagacgaaaaagaatgaatgaaggagctatttcttttgataaagta
gaagtaaaattcaacttgaatgaagaaggagaaccagaaggcgtttattttaaagtatca
aaagatgccaatcatttgattgaagaattcatgcttttggccaatagaaaagtggcagaa
tacattggaaaacaaaagaaaacttttatttatagaattcacgatgaacccaatgaagat
aaattaatcgccatgcaaacggtgattgctaaatttggttataaaattgattttagaaat
aaaggcgatatttccaaatcattgaatgctttgatggaagaagtaaacggtaaaaaagag
caaaatctaattgatactttggccattagaagtatgagtaaggccaaatattctacggat
aatattggtcattacggattggcttttgattattattcgcattttacttcgccaattcgt
cgttatcctgacgttatggtacaccgtttgttacagttttatttagatggagcaaagtct
gctgatgaagagttgtatgaaacgaagtgtttacattgttccacaatggaaggtttagct
acaaatgccgaacgtgattcgattaaatacatgcaggtaaaatacatgcaagatcatcag
gatcaggagtttttgggtgtaatttcgggcgtgaccgaatggggaatttatgtagaaatc
attgaaaataaatgtgaaggtatggttcgtattcgagatataaaagatgattattatact
ttcgatgaaaaacaatatgctttggtaggagcaacttcaaacaagttattacaattagga
gatgaaattttcgttaaagttaaaaacgctgatttagttaaaaaacaattggattttaat
tttttgagaagaatagaagaaacaataaaataa
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