Flavobacterium acetivorans: LNP19_10230
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Entry
LNP19_10230 CDS
T10181
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fav Flavobacterium acetivorans
Pathway
fav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LNP19_10230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fav03019
]
LNP19_10230
Enzymes [BR:
fav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LNP19_10230
Messenger RNA biogenesis [BR:
fav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LNP19_10230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
CMS1
P-loop_SecA
Cas3-like_C_2
DUF2828
Motif
Other DBs
NCBI-ProteinID:
UFH34470
LinkDB
All DBs
Position
complement(2341780..2343039)
Genome browser
AA seq
419 aa
AA seq
DB search
MLFEDLSLSKSIQKAVFEQGYTIPTPIQEQAIPLVLAGRDLVGCAQTGTGKTAAFAIPII
HQLHRIVGSSKKAKQIRALVVTPTRELAVQIGQNFDDYGKYTNLTQLTIFGGVSQNPQVD
ALKNGVDILVATPGRLLDLHKQGFIDLDHLHTLVLDEADQMLDMGFVNDVKKIVKLTPKN
RQTLFFSATMPIAIRELAEMFLTDPETVTVSPVSSTAENVEQHVYFVEKTEKRNLLYHLI
KNQDLSNILVFSRTKHGADNVVKALRKNNIAAEAIHGDKSQNARQRVLEAFKNKEVGVLV
ATDIAARGIDIDQLPFVINFDLPNIPETYVHRIGRTGRAGNGGVAISFCSKDEHGYWKDI
QKLIKVDVKTINDHPYPWHSGSPETAPGGSTKPKNSNRSGGAHKSRKSSASKQNKKRWY
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgttattcgaagatttatcgctttcaaaaagtatacaaaaagccgtatttgaacaaggc
tataccatccccactcccattcaagaacaagcaattcctttagttttagcaggaagagac
ttagtgggttgtgcacaaacaggaacaggaaaaacggcagcatttgccattcctatcatc
catcaattacaccgcattgtaggttcatcaaaaaaagccaaacaaattcgtgccctggta
gttaccccaactcgggaattagcagtccaaattggtcaaaattttgatgattatggaaaa
tataccaatttaacccaactcaccatttttggaggagtttctcaaaacccacaggttgat
gccttaaaaaacggggttgatattttggttgcaacaccgggaagattacttgatttacac
aaacaaggtttcattgacttagatcatttgcatacgcttgtattggatgaagcggatcaa
atgcttgatatgggctttgtaaatgatgtcaaaaaaatcgtaaagctaacgcctaaaaac
agacaaactctttttttctcggcaaccatgcctattgcaataagagaacttgccgaaatg
tttttgactgatcctgaaacagtaactgtttctccagtttcctctaccgccgaaaatgta
gaacaacacgtttattttgttgaaaaaacagagaaaagaaatctgttgtaccatttgata
aaaaatcaagatttatcgaatatattggttttttcaagaacgaaacacggcgcggacaat
gttgtaaaagcattacgaaaaaacaacatcgctgccgaagctattcatggcgataaatca
caaaatgccagacagcgtgtactggaagcttttaaaaacaaagaagtgggcgttcttgta
gccacagacattgccgctagaggaattgatattgaccaattgccttttgtcatcaacttt
gacctgccaaacatacccgaaacatacgtacaccgtattggtagaacaggacgtgccgga
aatggcggagttgctatttctttttgcagcaaagacgaacatggttattggaaagacatc
caaaaattaataaaagtagacgttaaaaccataaatgaccatccttatccgtggcattca
ggaagtcctgaaactgctcctggaggatcgactaaacctaaaaattcaaatcgcagcggc
ggtgctcacaaatcgagaaaatctagtgcttccaagcaaaataaaaaacgctggtattaa
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