Flavobacterium acetivorans: LNP19_14425
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Entry
LNP19_14425 CDS
T10181
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
fav Flavobacterium acetivorans
Brite
KEGG Orthology (KO) [BR:
fav00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fav03009
]
LNP19_14425 (rlmD)
Enzymes [BR:
fav01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
LNP19_14425 (rlmD)
Ribosome biogenesis [BR:
fav03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
LNP19_14425 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Cons_hypoth95
TRM5-TYW2_MTfase
MTS
TRAM
Methyltransf_15
N6_N4_Mtase
Methyltransf_11
PrmA
PCMT
FtsJ
UPF0020
DUF5868
Motif
Other DBs
NCBI-ProteinID:
UFH35269
LinkDB
All DBs
Position
3330131..3331546
Genome browser
AA seq
471 aa
AA seq
DB search
MAKKNTDKVVFHQIKVLDAGAKGVSVAKAPDGKVVFIPNVVPGDVVDVQTFKKRKAYYEG
KAVHFHEFSEHRVEPVCEHFGVCGGCKWQNMKYSQQLYYKQNEVLNHLQRIGKIELPEFE
PILGSEKKFFYRNKMEFSFSNSRWLTEAEIGSTEDLGNRNALGFHIPKMWDKILDINKCH
LQEDPSNAIRNEVRAFANEHGLTFFNPRAHEGLLRTLMLRTASTGEIMVLIQFFENDKAN
RELILDHLYAKFPQITSLQYVVNNKANDTLYDTDIKLYKGRDYILEEMEGLKFSINAKSF
YQTNSDQAYELYKITRDFAGLTGNEIVYDLYTGTGTIAQFVSKKAKKVIGVESVPDAIKD
AKANAVRNEISNCEFFVGDMKVVFNDEFIAQHGHPDVIITDPPRDGMHKDVIEQIMKIAP
EKVVYVSCNSATQARDLALMDEKYKVTRVRPVDMFPQTHHVENVVLLERRK
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaaatacagacaaagttgtctttcatcaaataaaagtccttgatgcaggt
gcaaaaggcgtttcggtagcaaaggctcccgatggtaaagtagtgtttattccgaatgtc
gttccgggtgatgtggttgacgtgcaaacttttaagaagcgtaaggcctattacgaaggg
aaagctgttcattttcatgaattctcagagcatcgtgtagaacctgtttgcgagcacttt
ggtgtttgtggcggttgtaaatggcaaaatatgaagtacagtcaacagctgtattacaag
caaaatgaagtcttgaatcatttacaacgcatcggaaaaatcgaacttccggaatttgaa
cctatattaggatcagagaaaaagttcttttatagaaataaaatggaattttctttttct
aacagccgttggttgactgaagctgaaataggaagtaccgaagatttaggcaacagaaat
gcactaggtttccatattcctaaaatgtgggacaaaatcctggacattaataaatgtcac
ttacaagaagatccatcaaatgcgattagaaatgaagtaagagcttttgctaacgagcat
ggcttgactttctttaaccccagagcgcacgaaggtttattaagaactttaatgttaaga
acggcttcaaccggggaaatcatggttttgattcaatttttcgaaaacgacaaagccaac
agagaattgatcctagaccatctttatgcgaaatttcctcaaatcacttccttacaatat
gtggtgaacaataaagccaacgatactttatacgataccgatattaaattatacaaaggt
agagattacattctggaagaaatggaaggtttaaagtttagcatcaatgcaaaatctttc
taccaaaccaattcagatcaagcctacgaattatacaaaataacaagagatttcgctggc
ctgaccggaaacgaaatcgtttatgatttatacactggaacaggaactattgctcagttt
gtttctaaaaaagcaaaaaaagtaataggagtagaaagtgttcctgatgcgattaaagat
gctaaagcaaatgcggtacgcaatgaaattagcaattgtgaattctttgtaggagacatg
aaagtggtttttaacgatgaattcattgcacaacacggccatcctgatgtgattatcacc
gatccgccaagagacggaatgcacaaagacgtaattgaacaaatcatgaaaatcgctcct
gagaaagtggtttacgtaagctgtaattcggctacacaagcgcgtgacttagccctgatg
gacgagaaatacaaagtgactcgtgtacgtcctgtggatatgtttccgcaaacacatcac
gtagaaaacgtagttcttctcgaaagaagaaaatag
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