Flagellimonas aurea: ABWH94_11340
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Entry
ABWH94_11340 CDS
T11242
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
faw Flagellimonas aurea
Pathway
faw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
faw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABWH94_11340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
faw03019
]
ABWH94_11340
03009 Ribosome biogenesis [BR:
faw03009
]
ABWH94_11340
Enzymes [BR:
faw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABWH94_11340
Messenger RNA biogenesis [BR:
faw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABWH94_11340
Ribosome biogenesis [BR:
faw03009
]
Prokaryotic type
rRNA helicases
ABWH94_11340
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DUF3194
DUF3440
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XHC20702
LinkDB
All DBs
Position
complement(2534511..2536268)
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AA seq
585 aa
AA seq
DB search
MTKFEALGLDKPLLDAISDLGFESPSEVQEKSIPILLEQETDLVALAQTGTGKTAAFGFP
MIQKIQHDSRTTQGLILSPTRELCLQITNELKLYSKYVKGINVVAIYGGASITDQARQIK
RGAQIVVATPGRMKDMIGRNMVDISKIDYCVLDEADEMLNMGFYEDIKDILSNTPKEKFT
WLFSATMPKEVATIAKKFMQNPVEITVGSKNAGASTVQHEYYVVGGRDRYAALKRLADAN
PGIFSVVFCRTKRDTQRVAEKLIEDGYNAGALHGDLSQNQRDLVMNSFRKKQVQMLVATD
VAARGIDVDDVTHVINYQLPDEIETYTHRSGRTGRAGKSGISMVIITRSELRKIKAIEKK
IQQDFISKKIPDGIEICEIQLYHLANKIKETKVNAEIDSYLPAINDVLEGVDREELIKKI
FSVEFTQFYNYYSKTKDLNSQDAERGNGASKGDIPTEGSVRYFINVGERDGYDWMSLKDF
LRDTLNLEKEDVYNVDTKDSFSFFNTDAQLTEFILQTFTDFKLEGRFINVEVSKNPGAGG
GGKGGKKRRGNKGGGGNRRGGNKSYKGGKKGGYGKKGGKKKQGFY
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttgaagccttggggttggacaaacccctattggatgctatttccgacctt
ggatttgaatccccctctgaagtacaagaaaaatcaatcccaattttattggagcaagaa
accgatttggttgccttggcacaaacaggaacaggtaaaaccgctgcctttggatttccg
atgattcaaaaaatccaacacgacagtagaaccacccaaggattgattctctcccctact
cgggaactctgtttacagatcaccaacgaattaaaactttattccaaatacgtaaaagga
atcaatgttgttgccatttatggtggtgccagcattaccgaccaggccagacagataaaa
agaggggcgcagattgttgttgccactcccggtcgtatgaaggacatgatcggccgaaac
atggtggacatctccaaaattgactattgcgtactggacgaagccgatgaaatgttgaac
atgggcttctatgaagatatcaaggacattttgtccaatactcccaaagaaaagtttaca
tggctgttctcggcaactatgccgaaagaagtggctaccattgccaaaaagttcatgcaa
aacccagtagagattactgttggttccaaaaatgcaggcgcctctacggtacaacatgaa
tattatgtagtaggtggacgtgaccgttacgctgcccttaaacgtttggccgatgccaac
ccaggtatcttttctgtagtgttctgtagaaccaaaagagatacacaacgtgtggcagaa
aaattgattgaagatggatacaatgccggtgcgctacatggtgatttgagccagaatcag
cgtgatttggtcatgaattcgttccgtaaaaaacaagtacagatgttggtagctaccgat
gtggctgcccgtggtatcgatgtggacgatgtaacccacgtaatcaactatcaattgccc
gatgaaatcgagacctatactcaccgaagtggtcgtactggacgtgccggaaaatccgga
atttccatggttattatcactcgttcagagttaaggaagatcaaggccattgagaaaaaa
atacagcaagattttatttccaaaaagattcctgacggcattgaaatctgcgagattcaa
ttgtaccacttggccaataagataaaagaaaccaaggtaaacgcagaaatcgacagctat
ttgcctgctataaacgatgtacttgaaggagttgatcgggaagagctgatcaagaagata
ttttcagtagaattcacccaattctacaattattatagcaagaccaaagacctcaacagt
caagatgctgaaagaggaaatggtgcatccaaaggtgatatacccacggaaggttccgta
cgatactttatcaatgttggggaacgcgatggttatgattggatgagcctgaaggatttc
ctcagagacaccttgaacttggaaaaagaagacgtctacaatgtggacaccaaagattct
ttctccttttttaataccgatgcccaactcactgaattcatccttcaaacctttaccgat
tttaaattggaaggacgcttcataaacgtggaagtttccaagaatccaggcgccggtggc
ggtggaaaaggtgggaaaaaacgtcgaggcaataaaggcggtggcggaaaccgaagaggt
ggcaacaagtcatataaaggaggaaaaaaaggaggttacggcaaaaaaggaggtaagaaa
aagcagggcttttattag
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