Flavivirga abyssicola: Q4Q34_05050
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Entry
Q4Q34_05050 CDS
T09912
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
fay
Flavivirga abyssicola
Pathway
fay03030
DNA replication
fay03430
Mismatch repair
fay03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q4Q34_05050 (dnaE)
03430 Mismatch repair
Q4Q34_05050 (dnaE)
03440 Homologous recombination
Q4Q34_05050 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fay03032
]
Q4Q34_05050 (dnaE)
03400 DNA repair and recombination proteins [BR:
fay03400
]
Q4Q34_05050 (dnaE)
Enzymes [BR:
fay01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Q4Q34_05050 (dnaE)
DNA replication proteins [BR:
fay03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Q4Q34_05050 (dnaE)
DNA repair and recombination proteins [BR:
fay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Q4Q34_05050 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WVK14393
LinkDB
All DBs
Position
complement(1247375..1251763)
Genome browser
AA seq
1462 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPITDTDNWPRCIQIAWQLHDAMGNCIDHQDYLVQPEGFNIPY
DAEKIHGISTELAQEQGVPLAEVLEKFNDALSKTKFVVGQNVKFDLNIMGAEFVRGDVAN
PLQELPVLDTCTEHTASLCQIPGGRGGKFKLPTLTELHEFLFKTPFAEAHNATADVEATT
RCFFELVRLGEYTKEQLDVEPEYFQNFNEANPKEIELIKLKHVNLKQESAKIRERLQSLK
QETVSTEDIKKNISDLADVDFVHLHNHSQFSVLQSTMSVGDIVAAAASHNMPAVALTDHA
NMMGAFHFINAVNKQNSSIKASIAEAEERGETSEKQLIKPIVGCEFFVCENHEDKSRKDN
GYQVVLIAKNKNGYHNLAKLSSHAFVNGFYYVPRIDKKLIQQYKEDIIVLTGNLYGEVPS
KVLNIGEKQAEEALLWWKNEFGDDLYVELMRHNQEDENRVNPTLIALAKKHDVKLVATNN
TYYQKQADANAHDILLCVKDGEKQATPIGRGRGYRYGLPNQEYYFKSSDEMKELFHDQPE
AIINISDLVDKIEGFQLARDVLLPAFDIPDEFKHEEDLADGGKRGENAYLKHLTFEGAKK
RYGEPLSEEVVERLDFELSVIENTGYPGYFLIVEDFIREARNMDVSVGPGRGSAAGSVAA
YCLWITNIDPLKYDLLFERFLNPDRISMPDIDIDFDDEGRSRVMDYVIDKYGANQVAQII
TYGTMAAKSSIRDTARVLDLPLFDADRIAKLIPNMSKLNKIFGLNEKALAGKFRAEELEK
VNELLNISEGSGLEAETVNTARALEGSVRNTGIHACGVIITPDDITKFVPVSVAKDSDLY
VTQFDNSVVEDAGLLKMDFLGLKTLTLIKDTVKIVKAKHNILLDPESFPLDDEETYALFQ
RGETVGVFQYESPGMQKHLRDLKPTVFEDLIAMNALYRPGPMEYIPSFVRRKHGDEDIEY
DLPAMEEYLKETYGITVYQEQVMLLSQKLAGFTKGEADVLRKAMGKKQIAVLDKMKPKFV
EQASANGHDAKVLEKVWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLS
NNMNDIKQVTFFMEECKRMKLDVLGPDVNESYYKFSVNNDNAVRFGMGAIKGVGHGAVMT
IVENRKEDGPYKSIFDLAKRIDLRAANKKAFENLALAGGFDCFGGTHRAQYFHKEGDGIT
FLEKAVKYGNKHQENENSSQVSLFGATSDVQIAEPEVPPCEEWGTMEKLAQEREVVGVYI
SGHPLDDFKTEMKTFCNGAIAMFNNLEPYVNREIVFGGVVTDVQHRVSKQGKGWGMFTVE
DYTDSFEFRIFGEEYLKFRHFLMKNNFVFVKSFIREGWVNKDTGKKSDPRLQFNSFQLLH
DVMENYAKKLSIQLNIKDLHEESILRLKELLQMHPGNQALNFVVYDNKDKIKLQMPSRRQ
KVKVSQELLSELESQDVMFKLN
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atgtacttaattttcgatacagaaactactggattaccaaaacgttgggatgcacctatt
accgatacagataattggccaaggtgtattcagattgcatggcagttacacgatgctatg
gggaactgtatcgatcatcaagattatttggtacaacccgaaggttttaatattccttat
gatgctgagaaaattcatggaatttctacagaattagcccaagaacaaggtgtcccttta
gcagaagttctggaaaaatttaatgatgctttaagtaaaacgaagtttgttgttggacaa
aatgtaaagtttgatttaaacattatgggcgccgaatttgttcggggtgatgttgcgaat
ccattacaggaattgcccgttttggatacctgtacagaacatacggcaagtttgtgtcag
attcccggtggacgaggcggtaaatttaaactcccaacactaaccgaattacatgagttt
ttatttaagactccttttgcagaagcgcataatgcaacggccgatgtagaggcaacgaca
cgctgcttttttgagttggttcgtttgggcgagtatactaaagaacaacttgatgtagaa
cctgagtattttcagaattttaacgaagccaatccaaaagaaattgagcttataaaatta
aagcacgttaatcttaaacaagaaagtgctaaaattcgagagcgtcttcaaagtcttaaa
caagaaacagtttcaactgaagatattaagaaaaatatatctgatttagctgatgttgat
tttgtacaccttcataaccattcacagttttctgtattacaatctactatgagtgttgga
gacatcgtggctgctgcagcctctcataatatgccagctgtggcgctcaccgatcatgca
aatatgatgggtgcgtttcattttataaatgctgttaacaaacaaaatagtagtataaag
gcgagtatagcagaagcggaggagcgaggtgagacgtcagaaaaacaattgataaaaccc
attgtaggatgtgagttttttgtttgcgaaaaccatgaagataaatcaagaaaagataat
gggtatcaggtggtgttgatagctaaaaacaaaaacgggtatcataatcttgcaaaacta
tcttcgcatgcctttgttaatgggttttactatgtacccagaatagataaaaaactcata
caacaatataaggaagacattatagtccttactggtaacttgtatggtgaagtacccagt
aaagtacttaatataggtgaaaaacaagccgaagaagcattgctatggtggaaaaatgag
ttcggagatgatctgtatgtagaactcatgcgacataatcaagaagatgaaaatcgtgta
aacccaactttgatagcattagcgaaaaagcatgatgtaaaattggtagcaacaaataat
acatactaccagaaacaagccgatgcgaatgcacatgatattttactatgtgtaaaagat
ggcgaaaaacaggccacgcctataggtagaggaagaggttaccgttatgggttacctaac
caggaatattattttaagtcttctgacgaaatgaaggaattatttcatgatcaaccagaa
gccattataaatattagtgacttagttgataaaattgaaggattccaacttgcaagagat
gtccttttaccagcttttgatattcccgatgaatttaagcacgaggaagatttagctgat
ggtggtaaacgtggtgaaaatgcctatttaaaacatttaacatttgaaggggctaaaaaa
cgctatggagaaccgcttagtgaagaggtcgtcgaacggttagatttcgaattaagcgta
attgaaaacacaggatatcctgggtatttcttaattgtagaggattttattcgagaggct
cgaaacatggatgtatccgtaggaccgggtcgtgggtctgctgccggatcagtagccgca
tactgcttgtggattaccaatatcgatcctttgaagtatgatttgctttttgagcgtttc
ttgaatccagatcgtattagtatgccagatattgatatcgattttgatgatgaaggaaga
agtcgggttatggattatgtgattgataagtatggtgctaatcaagtagcacaaattatt
acttatggtactatggcggctaagtcgtccattcgagatacagcacgtgtgttagatttg
cctctgtttgatgccgatagaattgcgaagttgatacctaatatgtctaaacttaataaa
atttttgggttaaacgaaaaagcgctggcaggcaagtttagagcagaagaattagaaaaa
gttaatgagcttttaaatatttctgaaggatcaggtttagaagcagagactgttaataca
gcgcgagctctggaaggttctgtgagaaatacaggaatccatgcctgtggggttattata
acacccgatgatatcactaagttcgtacccgtatctgtagctaaagattccgatttgtac
gtcacgcagtttgataactcggttgttgaagatgctggcttattaaaaatggattttttg
gggttaaagacactgactttaattaaggatactgttaaaattgtaaaagcaaaacataat
attttactggatccagaatcctttcctttagatgatgaagaaacctatgctttattccaa
cgtggagaaactgtaggggtgtttcaatatgaatctcccggaatgcaaaaacaccttaga
gatttaaagccaacagtttttgaagatttaattgccatgaatgccttgtatcgtccggga
cctatggaatatattccaagtttcgttagaagaaaacatggtgatgaagatattgagtac
gatttaccagcaatggaagagtatttaaaagaaacttacggtattacagtgtatcaagag
caggtgatgttactttctcaaaaattagctggatttacaaaaggtgaagccgatgtatta
cgtaaggcgatggggaaaaagcaaattgcggtactggataaaatgaaaccgaaatttgtt
gagcaagcgagtgcaaatggacatgatgctaaagtgctagaaaaggtatggaaagattgg
gaagcctttgcaagttatgcctttaacaaatctcactccacctgttacgcatggattgct
taccaaactgcttatttaaaagcacactacccagcagaatatatggctgctgtattatcc
aataacatgaacgatatcaaacaggttacgttctttatggaagaatgtaaacgtatgaaa
ttggatgttttgggaccagatgttaacgaatcgtattataagttttctgtaaataatgat
aatgcggtacgttttggaatgggagctataaaaggtgttggtcatggtgccgtaatgact
attgttgaaaatagaaaagaagatggcccgtataaatctattttcgatttagcaaaacga
atcgatttaagagcagccaataaaaaagcctttgaaaatttagctttagctggaggtttt
gattgttttggaggtacacatcgcgcccagtattttcataaagaaggtgatggcattact
tttttggaaaaagcagttaaatatggcaataaacatcaagaaaacgagaattcatctcaa
gtaagtttatttggagcaaccagtgatgttcagatagcagaaccagaagtaccaccatgt
gaagaatggggaacaatggaaaaattagcgcaagagcgtgaggttgtaggcgtttatatt
tctgggcatccgttagacgattttaaaactgaaatgaagaccttttgtaatggcgccatt
gctatgtttaataatttagaaccttatgtaaacagagaaattgtttttggtggtgttgta
accgatgtacaacatcgtgtgagcaagcaaggaaaagggtggggaatgtttactgttgaa
gattatacagatagttttgaattcaggatttttggtgaagaatatttaaaattcagacac
tttttaatgaaaaataactttgtgtttgtaaaatcatttattagagaaggctgggttaat
aaagatacaggaaaaaagagtgatccaagattacaatttaatagttttcaattactacat
gatgtcatggaaaactatgctaaaaaactttccattcagcttaatatcaaagatttacat
gaagagagcattttacgcttaaaagaattattgcaaatgcatcctggaaaccaagcgtta
aattttgtggtttatgacaataaagacaaaataaaattacagatgcctagtagaagacaa
aaagttaaagtatctcaagaattacttagtgaattagaaagtcaggatgtgatgtttaaa
ttgaattaa
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integrated database retrieval system
