Flavivirga abyssicola: Q4Q34_11915
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Entry
Q4Q34_11915 CDS
T09912
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fay
Flavivirga abyssicola
Pathway
fay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q4Q34_11915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fay03019
]
Q4Q34_11915
Enzymes [BR:
fay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q4Q34_11915
Messenger RNA biogenesis [BR:
fay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q4Q34_11915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Fe-ADH
AAA_19
UvrD-helicase
Shikimate_DH
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WVK11932
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All DBs
Position
2827605..2828891
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AA seq
428 aa
AA seq
DB search
MSFNSLGLSQALLKAVSKKGYTTPSPIQQKAIPPILEGKDVLASAQTGTGKTAGFTLPLL
HFLSENPKEKYRPIRALILTPTRELAAQVYDNVKEYSEFLNLRSAVIFGGVNQKPQVARI
RQGIDILVATPGRLLDLENQGLLSLKRIEMFVLDEADRMLDMGFLRDIERVIKMMPTRRQ
NLMFSATFSKDIKKLAHGILHNPVQVEATPENTTVEAISQKVYRVAKGLKTGLIIKLISD
GNWKQVLVFTRTKHGANKLCKKMISSNISAAAIHGNKSQGARTKALAGFKNGSIRVLVAT
DIAARGLDIPLLPHVINFELPNISEDYVHRIGRTGRAGAKGEALSLVSADETTYLRDIEK
LIAMKLPVEIIEGFEPDPNASTVPAKQQRGGRNRNKARSHSNSGNSKARGQRSNNSSRRP
KKNNDRRR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaactcattaggcttatctcaggccttactaaaagctgttagcaaaaaagga
tacacaacaccatcgcctatacaacaaaaagcaattccacctattttagaagggaaggat
gttttagcatctgcacaaaccggtacagggaaaacagctggttttacgttgccacttttg
cattttctttctgaaaatcctaaagaaaagtatagaccaatacgtgccttaatattaaca
ccaactagagagttagcagcgcaggtatatgataacgtaaaggagtacagcgagttttta
aatctaagaagtgctgttatatttggaggggtaaatcagaaaccacaagtagcaaggatt
cgtcagggtatcgatattttagtagctacacctggacgtttattagatttagaaaaccaa
ggactattatctctaaaaagaattgaaatgtttgttttagatgaagcggaccgcatgtta
gatatggggtttttacgcgatattgaacgggtgataaaaatgatgccaaccagaaggcaa
aatttgatgttctcggcaacattttcaaaagacataaagaaattagcacatggtattttg
cataacccggtgcaggttgaagctacgccagaaaatacaaccgttgaagccataagtcag
aaggtttatcgcgttgcaaaaggtttaaaaacgggtttaattattaaattgatttctgat
ggcaactggaaacaagtgcttgtttttacgcgtactaaacacggtgccaataagctttgt
aaaaagatgataagttctaatattagtgcagctgctatacatggtaacaagagtcaaggt
gctagaacaaaagctttggcaggttttaaaaatggaagcattcgtgttttagtggccacg
gatattgcagccagaggtttggatattcctttattaccacatgttataaattttgaattg
cctaatatttctgaagattatgtgcatagaataggcagaacgggaagagcaggagctaaa
ggagaagccttatctttggttagtgcagatgagacaacatatttgagagacatagaaaag
ttgatagcgatgaagcttcctgtagaaattattgagggttttgagcctgatcccaatgct
tccactgttcctgcaaaacaacagcgtggtggtaggaataggaataaagctagaagtcat
tctaattctggaaattcaaaagcaagaggacaaagaagtaataattccagtcgtcgccct
aagaaaaataatgatagaagacgttaa
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