Flavivirga abyssicola: Q4Q34_12825
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Entry
Q4Q34_12825 CDS
T09912
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
fay
Flavivirga abyssicola
Pathway
fay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Q4Q34_12825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fay03019
]
Q4Q34_12825
Enzymes [BR:
fay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Q4Q34_12825
Messenger RNA biogenesis [BR:
fay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Q4Q34_12825
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
Cas3-like_C_2
MTS_N
Helicase_RecD
GCD14
Motif
Other DBs
NCBI-ProteinID:
WVK12102
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All DBs
Position
complement(3056553..3057794)
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AA seq
413 aa
AA seq
DB search
MSFKDLQLNRPILRAIAETGYDEPTLVQEKTIPLVLNKKDVIVSAQTGTGKTASFALPIL
QLLFDKQDASKKGKKIRALIVSPTRELAIQIGENFKNYSTYTNLRTTVVYGGTSIEPQID
ILKKGVDILIATPGRLLDLHKQNIANLDHVETLVLDEADLMLDMGFIDDVKKIERLCTKE
KQTLLFSATIPYKVEQLANTILKTPERVEVAPNSSTSKNINQALYYVPKRNKIELCLHLL
RNTIKGSILIFRRTKFGVEKLEQTLLKNGYKVDSIHGDKSQNLRQEALKNFKSNNVNILI
ATDVAARGIDINNLDAVINFDLPNVPETYVHRIGRTARAGNTGASYSFCSADEKNYVKTI
QQLIQIQIDVIEDHPYPLDPKAKPIIHKSKKTGSKYKKGRKSEASKKKKKRWY
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaagacttacaattaaacaggcccattttaagggctattgcagaaacaggc
tatgatgaaccaacactcgttcaagaaaaaacaattcctttagttttaaacaaaaaggat
gttattgtttctgctcaaaccggcaccggaaaaacagcttcttttgctttacctatttta
caattgttatttgacaaacaggatgcgtcaaaaaaaggaaaaaaaattcgcgctctaatc
gtaagtccaacccgcgaattagccatacaaattggagaaaactttaaaaactatagtact
tatacaaacttaagaaccacagtcgtttatggaggtacttctatcgaacctcaaatagat
attctaaaaaaaggtgtggatattttaattgcgactcctggtcgtttgcttgatttacac
aagcaaaacattgcgaacctagaccatgtcgaaactttagtactggatgaagccgattta
atgttggatatgggctttattgatgatgtaaaaaaaattgagcgtctttgtaccaaagaa
aaacaaaccttattattctccgcaaccattccttataaagtagaacagctagccaatacc
attttaaaaacaccagaacgtgttgaagtagccccaaactcatcaacatcaaaaaacata
aaccaggcactttattatgtgccaaagcgtaataaaattgaattgtgtttgcatttatta
agaaataccataaaaggcagtatccttatttttagacggactaagttcggtgttgaaaaa
ttagaacaaacattattgaaaaatggttataaagttgatagtattcatggtgataaaagc
cagaatttaaggcaagaggctttaaaaaactttaaatccaataatgttaatattttaatt
gccaccgatgttgctgcccgtggtattgatattaataatttagatgctgttattaatttt
gatttgcctaatgtaccagagacttatgtgcatagaataggacgaacagcaagagctgga
aatacaggagcctcctattcattttgttctgcagatgaaaaaaattatgtaaaaacaatc
cagcaacttatccaaatacaaatagacgttattgaagaccacccttatcctttagaccca
aaggcaaaacctattattcataaatctaaaaaaacaggtagtaagtataaaaagggacgt
aaaagcgaagcctcaaaaaagaaaaagaaacgttggtactaa
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